Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q6388_RS05475 Genome accession   NZ_CP130895
Coordinates   1052634..1053158 (-) Length   174 a.a.
NCBI ID   WP_003688219.1    Uniprot ID   B4RKU5
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1047634..1058158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS05460 (Q6388_05460) recP/tkt 1047762..1049741 (+) 1980 WP_003688227.1 transketolase Machinery gene
  Q6388_RS05465 (Q6388_05465) fumC 1049885..1051273 (+) 1389 WP_003691001.1 class II fumarate hydratase -
  Q6388_RS05470 (Q6388_05470) - 1051338..1052261 (-) 924 WP_003695068.1 DMT family transporter -
  Q6388_RS05475 (Q6388_05475) ssb 1052634..1053158 (-) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  Q6388_RS05480 (Q6388_05480) - 1053162..1054544 (-) 1383 WP_003698298.1 MFS transporter -
  Q6388_RS05485 (Q6388_05485) - 1054656..1055246 (-) 591 WP_304673001.1 lytic transglycosylase domain-containing protein -
  Q6388_RS05490 (Q6388_05490) - 1055748..1056014 (-) 267 Protein_1073 transposase -
  Q6388_RS05495 (Q6388_05495) - 1056051..1056541 (-) 491 Protein_1074 transposase -
  Q6388_RS05500 (Q6388_05500) - 1056677..1056895 (-) 219 WP_232017996.1 pilin -
  Q6388_RS05505 (Q6388_05505) - 1056909..1057583 (-) 675 WP_048589525.1 opacity family porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.68 Da        Isoelectric Point: 5.8313

>NTDB_id=788369 Q6388_RS05475 WP_003688219.1 1052634..1053158(-) (ssb) [Neisseria gonorrhoeae strain NJ1913940]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQNQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=788369 Q6388_RS05475 WP_003688219.1 1052634..1053158(-) (ssb) [Neisseria gonorrhoeae strain NJ1913940]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAATCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

99.425

100

0.994
  ssb Neisseria meningitidis MC58

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.486

100

0.489
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.454