Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSR30_RS18115 Genome accession   NZ_CP117874
Coordinates   4031194..4031739 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4026194..4036739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR30_RS18105 (PSR30_18105) - 4027673..4028092 (-) 420 WP_274214371.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PSR30_RS18110 (PSR30_18110) uvrA 4028109..4030943 (-) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  PSR30_RS18115 (PSR30_18115) ssb 4031194..4031739 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PSR30_RS18120 (PSR30_18120) - 4031898..4032509 (-) 612 WP_119881360.1 hypothetical protein -
  PSR30_RS18125 (PSR30_18125) - 4032760..4033215 (+) 456 WP_039541316.1 GNAT family N-acetyltransferase -
  PSR30_RS18130 (PSR30_18130) - 4033282..4034319 (-) 1038 WP_103198670.1 LacI family DNA-binding transcriptional regulator -
  PSR30_RS18135 (PSR30_18135) - 4034319..4035371 (-) 1053 WP_010295141.1 carbohydrate ABC transporter permease -
  PSR30_RS18140 (PSR30_18140) - 4035380..4036378 (-) 999 WP_039470140.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=788180 PSR30_RS18115 WP_010295128.1 4031194..4031739(+) (ssb) [Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=788180 PSR30_RS18115 WP_010295128.1 4031194..4031739(+) (ssb) [Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGGGTGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAGCGCCCTGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459