Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PUO95_RS03940 | Genome accession | NZ_CP117823 |
| Coordinates | 932253..932699 (-) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain ICMP 8742 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 918902..940052 | 932253..932699 | within | 0 |
Gene organization within MGE regions
Location: 918902..940052
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUO95_RS03865 (PUO95_03865) | - | 918902..919414 (+) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
| PUO95_RS03870 (PUO95_03870) | pilV | 919411..919893 (+) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| PUO95_RS03875 (PUO95_03875) | - | 919890..921146 (+) | 1257 | WP_004089768.1 | PilW family protein | - |
| PUO95_RS03880 (PUO95_03880) | - | 921146..921640 (+) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| PUO95_RS03885 (PUO95_03885) | - | 921644..926209 (+) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| PUO95_RS03890 (PUO95_03890) | - | 926206..926661 (+) | 456 | WP_012382713.1 | type IV pilin protein | - |
| PUO95_RS03900 (PUO95_03900) | - | 926855..927124 (-) | 270 | WP_140161513.1 | hypothetical protein | - |
| PUO95_RS03905 (PUO95_03905) | - | 927179..927868 (+) | 690 | WP_228446149.1 | restriction endonuclease | - |
| PUO95_RS03910 (PUO95_03910) | - | 927865..929319 (+) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| PUO95_RS03915 (PUO95_03915) | - | 929473..929598 (+) | 126 | WP_256626233.1 | hypothetical protein | - |
| PUO95_RS03920 (PUO95_03920) | - | 929799..930206 (-) | 408 | WP_012382712.1 | hypothetical protein | - |
| PUO95_RS03925 (PUO95_03925) | - | 930273..930476 (-) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| PUO95_RS03930 (PUO95_03930) | - | 930786..931959 (-) | 1174 | Protein_754 | integrase | - |
| PUO95_RS03935 (PUO95_03935) | - | 931959..932234 (-) | 276 | WP_011098179.1 | hypothetical protein | - |
| PUO95_RS03940 (PUO95_03940) | ssb | 932253..932699 (-) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| PUO95_RS03945 (PUO95_03945) | - | 932683..933012 (-) | 330 | WP_011098178.1 | DUF5131 family protein | - |
| PUO95_RS03950 (PUO95_03950) | - | 932930..933103 (+) | 174 | WP_155115078.1 | hypothetical protein | - |
| PUO95_RS03955 (PUO95_03955) | - | 933205..933606 (-) | 402 | WP_038233152.1 | hypothetical protein | - |
| PUO95_RS03960 (PUO95_03960) | - | 933605..934660 (+) | 1056 | WP_038233149.1 | DNA primase | - |
| PUO95_RS03965 (PUO95_03965) | - | 934657..936126 (+) | 1470 | WP_038233147.1 | VapE domain-containing protein | - |
| PUO95_RS03970 (PUO95_03970) | - | 936523..937131 (+) | 609 | WP_004088848.1 | hypothetical protein | - |
| PUO95_RS03975 (PUO95_03975) | - | 937128..939227 (+) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| PUO95_RS03980 (PUO95_03980) | - | 939304..939540 (+) | 237 | WP_004088842.1 | hypothetical protein | - |
| PUO95_RS03985 (PUO95_03985) | - | 939537..940052 (+) | 516 | WP_004088839.1 | phage portal protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=787783 PUO95_RS03940 WP_004088866.1 932253..932699(-) (ssb) [Xylella fastidiosa subsp. fastidiosa strain ICMP 8742]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=787783 PUO95_RS03940 WP_004088866.1 932253..932699(-) (ssb) [Xylella fastidiosa subsp. fastidiosa strain ICMP 8742]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |