Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q5420_RS28055 Genome accession   NZ_CP130751
Coordinates   6035336..6035932 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6030336..6040932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5420_RS28035 (Q5420_28035) aroK 6031467..6031985 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q5420_RS28040 (Q5420_28040) pilQ 6031997..6034141 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  Q5420_RS28045 (Q5420_28045) comL/pilP 6034195..6034719 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q5420_RS28050 (Q5420_28050) pilO 6034716..6035339 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5420_RS28055 (Q5420_28055) pilN 6035336..6035932 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q5420_RS28060 (Q5420_28060) pilM 6035932..6036996 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q5420_RS28065 (Q5420_28065) - 6037181..6039652 (+) 2472 WP_061189531.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=787783 Q5420_RS28055 WP_003095839.1 6035336..6035932(-) (pilN) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=787783 Q5420_RS28055 WP_003095839.1 6035336..6035932(-) (pilN) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369