Detailed information NTG0078765

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QML87_RS01200
• Genome accession: NZ_AP025936
• Coordinates: 218385..219383 (+)
• Length: 332 a.a.
• NCBI ID: WP_025171978.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700617
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 213385..224383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QML87_RS01175 (PC0607_02250)	-	214464..215525 (+)	1062	WP_001260285.1	hypothetical protein	-
QML87_RS01180 (PC0607_02260)	-	215752..216447 (+)	696	WP_001144917.1	GNAT family protein	-
QML87_RS01185 (PC0607_02270)	-	216459..216875 (+)	417	WP_000628381.1	GNAT family N-acetyltransferase	-
QML87_RS01190	-	217727..217819 (-)	93	WP_000970294.1	type I toxin-antitoxin system Fst family toxin	-
QML87_RS01195	-	218160..218252 (-)	93	WP_000970377.1	type I toxin-antitoxin system Fst family toxin	-
QML87_RS01200 (PC0607_02280)	ruvB	218385..219383 (+)	999	WP_025171978.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QML87_RS01205 (PC0607_02300)	-	219364..219937 (+)	574	Protein_234	nucleotidyltransferase family protein	-
QML87_RS01210 (PC0607_02310)	-	220093..221046 (-)	954	WP_001155321.1	IS30-like element ISSpn8 family transposase	-
QML87_RS01215 (PC0607_02320)	-	221413..222171 (+)	759	WP_000466719.1	isoprenyl transferase	-
QML87_RS01220 (PC0607_02330)	-	222180..222983 (+)	804	WP_000189866.1	phosphatidate cytidylyltransferase	-
QML87_RS01225 (PC0607_02340)	eeP	223005..224264 (+)	1260	WP_000900662.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37319.76 Da
• Isoelectric Point: 4.5018

>NTDB_id=78765 QML87_RS01200 WP_025171978.1 218385..219383(+) (ruvB) [Streptococcus pneumoniae strain PZ900700617]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGDGVIN
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRMATAK
AYEHLGYEYNEK

Nucleotide

• Length: 999 bp

>NTDB_id=78765 QML87_RS01200 WP_025171978.1 218385..219383(+) (ruvB) [Streptococcus pneumoniae strain PZ900700617]
ATGAGTAGAATTTTAGATAATGAGATAATGGGGGACGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTACTTACGTGA
ATATATTGGGCAGGATAAGGTTAAGGACCAGCTTCAAATCTTTATAGAAGCTGCCAAAATGCGAGATGAAGCGCTGGATC
ATGTCCTCTTATTTGGGCCTCCAGGTTTGGGGAAAACGACCATGGCTTTTGTTATTGCCAACGAACTAGGTGTCAATCTC
AAGCAGACTTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCAATTTTGAATGACTTAGAGCCTGGGGATGTCCT
CTTTATTGATGAGATTCATCGCTTGCCTATGTCGGTGGAAGAGGTGCTTTATAGTGCCATGGAGGACTTTTACATAGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTACCACCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCTCATGCTGACTTGAC
GGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCGTCTGAGTTGGCCCTACGTAGCC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATTATGGGGGATGGGGTTATCAAT
GATGTTATTACGGATAAGGCTTTGACCATGCTGGATGTTGACCATGAAGGTCTGGACTATGTGGACCAAAAAATCCTTCG
GACCATGATTGAGATGTACAGTGGAGGGCCTGTTGGTTTAGGAACTCTTTCTGTGAATATTGCCGAGGAGCGCGAGACGG
TGGAGGACATGTATGAACCTTACTTAATCCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGATGGCGACTGCTAAG
GCATATGAGCATTTGGGGTATGAGTACAATGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	98.494	100	0.985
ruvB	Streptococcus pneumoniae R6	98.193	100	0.982
ruvB	Streptococcus pneumoniae D39	98.193	100	0.982
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.736	98.193	0.596
ruvB	Helicobacter pylori 26695	50.464	97.289	0.491
ruvB	Synechocystis sp. PCC 6803	47.892	100	0.479