Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG328_RS10475 Genome accession   NZ_CP130730
Coordinates   2369761..2370831 (-) Length   356 a.a.
NCBI ID   WP_019059776.1    Uniprot ID   A0ABU4FLT8
Organism   Streptomyces sp. NBC_01518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2364761..2375831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS10455 (OG328_10435) - 2365500..2366039 (-) 540 WP_405838156.1 adenine phosphoribosyltransferase -
  OG328_RS10460 (OG328_10440) secF 2366036..2367160 (-) 1125 WP_405838158.1 protein translocase subunit SecF -
  OG328_RS10465 (OG328_10445) secD 2367162..2368946 (-) 1785 WP_405838160.1 protein translocase subunit SecD -
  OG328_RS10470 (OG328_10450) yajC 2369089..2369595 (-) 507 WP_318015191.1 preprotein translocase subunit YajC -
  OG328_RS10475 (OG328_10455) ruvB 2369761..2370831 (-) 1071 WP_019059776.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG328_RS10480 (OG328_10460) ruvA 2370843..2371451 (-) 609 WP_405838163.1 Holliday junction branch migration protein RuvA -
  OG328_RS10485 (OG328_10465) ruvC 2371448..2372059 (-) 612 WP_405838165.1 crossover junction endodeoxyribonuclease RuvC -
  OG328_RS10490 (OG328_10470) - 2372264..2373016 (-) 753 WP_033282259.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG328_RS10495 (OG328_10475) pdxT 2373068..2373670 (-) 603 WP_405838167.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG328_RS10500 (OG328_10480) pdxS 2373670..2374581 (-) 912 WP_200686525.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OG328_RS10505 (OG328_10485) - 2374748..2375290 (-) 543 WP_033282256.1 membrane protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38146.47 Da        Isoelectric Point: 4.7716

>NTDB_id=787516 OG328_RS10475 WP_019059776.1 2369761..2370831(-) (ruvB) [Streptomyces sp. NBC_01518]
MNWDDTTDETAAERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPTELERVIHRSANLLDVEIDPAGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGFITQDIAGAALKVYEVDGRGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRSSTGGNGQGDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=787516 OG328_RS10475 WP_019059776.1 2369761..2370831(-) (ruvB) [Streptomyces sp. NBC_01518]
GTGAACTGGGACGATACGACCGACGAGACCGCCGCCGAGCGGCTGGTGGGCTCGGTCGCCGACCGCGAGGACCAGGCCGT
CGAGGCCGCCCTGCGCCCCAAGGACCTGGGCGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTCGACCTGGTGCTGC
GCGCCGCACGCGCGCGTGGCGCCACTGCCGACCACGTGCTGCTCTCCGGCGCCCCGGGCCTCGGCAAGACCACCCTGTCG
ATGATCATCGCGGCCGAGATGGAGGCCCCGATCCGCATCACCAGCGGGCCCGCCATCCAGCACGCCGGCGACCTCGCGGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCTAGGCCCGCCGAAGAGATGC
TCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCGATCCCGCTCGAACTG
CCGCCGTTCACCCTGGTCGGCGCCACCACGCGCGCGGGACTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGAACCCACCGAGCTGGAGCGCGTCATCCACCGCTCGGCGAACCTCCTCGACGTGGAGATCGACC
CCGCCGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCCCGCATCGCCAACCGGCTGCTGCGCCGCGTACGGGAC
TACGCGCAGGTCAAGGCCGACGGCTTCATCACCCAGGACATCGCCGGAGCCGCCCTCAAGGTCTACGAGGTCGACGGCCG
CGGCCTCGACCGGCTCGACCGCGGTGTCCTCGAAGCGCTGCTCAAGCTGTTCGGCGGGGGACCGGTCGGCCTGTCCACGC
TCGCCGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAACCCTTCCTCGTACGGGAGGGACTGCTGGCC
CGTACCCCGCGCGGACGCGTCGCCACCCCGGCCGCGTGGGCGCATCTGGGCCTCACCCCGCCCCGCTCGTCAACCGGGGG
AAACGGACAAGGGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(192-265)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.152

92.697

0.511
  ruvB Synechocystis sp. PCC 6803

54.459

88.202

0.48
  ruvB Streptococcus pneumoniae R6

52.381

88.483

0.463
  ruvB Streptococcus pneumoniae D39

52.381

88.483

0.463
  ruvB Streptococcus pneumoniae TIGR4

52.381

88.483

0.463
  ruvB Helicobacter pylori 26695

50.629

89.326

0.452