Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PTC93_RS16720 Genome accession   NZ_CP117762
Coordinates   3449814..3450455 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 2022CK-00839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3444814..3455455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC93_RS16700 (PTC93_16690) aroK 3445725..3446294 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PTC93_RS16705 (PTC93_16695) pilQ 3446306..3448471 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PTC93_RS16710 (PTC93_16700) pilP 3448539..3449066 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PTC93_RS16715 (PTC93_16705) pilO 3449077..3449817 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PTC93_RS16720 (PTC93_16710) pilN 3449814..3450455 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  PTC93_RS16725 (PTC93_16715) - 3450455..3451515 (-) 1061 Protein_3266 pilus assembly protein PilM -
  PTC93_RS16730 (PTC93_16720) ponA 3451678..3454233 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  PTC93_RS16735 (PTC93_16725) - 3454251..3455075 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  PTC93_RS16740 (PTC93_16730) - 3455078..3455410 (-) 333 WP_000169594.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=787516 PTC93_RS16720 WP_000201227.1 3449814..3450455(-) (pilN) [Acinetobacter baumannii strain 2022CK-00839]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=787516 PTC93_RS16720 WP_000201227.1 3449814..3450455(-) (pilN) [Acinetobacter baumannii strain 2022CK-00839]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709