Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG742_RS38030 Genome accession   NZ_CP130727
Coordinates   8464890..8465960 (+) Length   356 a.a.
NCBI ID   WP_266467513.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00828     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8459890..8470960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG742_RS38000 (OG742_37925) - 8460406..8460951 (+) 546 WP_384456118.1 hypothetical protein -
  OG742_RS38005 (OG742_37930) pdxS 8461104..8462009 (+) 906 WP_405911224.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OG742_RS38010 (OG742_37935) pdxT 8462016..8462630 (+) 615 WP_405909665.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG742_RS38015 (OG742_37940) - 8462679..8463431 (+) 753 WP_266467504.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG742_RS38020 (OG742_37945) ruvC 8463627..8464244 (+) 618 WP_371551085.1 crossover junction endodeoxyribonuclease RuvC -
  OG742_RS38025 (OG742_37950) ruvA 8464241..8464849 (+) 609 WP_266467510.1 Holliday junction branch migration protein RuvA -
  OG742_RS38030 (OG742_37955) ruvB 8464890..8465960 (+) 1071 WP_266467513.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG742_RS38035 (OG742_37960) yajC 8466124..8466639 (+) 516 WP_405909666.1 preprotein translocase subunit YajC -
  OG742_RS38040 (OG742_37965) secD 8466781..8468547 (+) 1767 WP_405909667.1 protein translocase subunit SecD -
  OG742_RS38045 (OG742_37970) secF 8468549..8469664 (+) 1116 WP_405909668.1 protein translocase subunit SecF -
  OG742_RS38050 (OG742_37975) - 8469661..8470200 (+) 540 WP_405909669.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38248.64 Da        Isoelectric Point: 4.7789

>NTDB_id=787473 OG742_RS38030 WP_266467513.1 8464890..8465960(+) (ruvB) [Streptomyces sp. NBC_00828]
MNWDDTTDETAAERLVGSVADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSANLLDVEIDTVGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGFITKDIASAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRQSTGGKGQGDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=787473 OG742_RS38030 WP_266467513.1 8464890..8465960(+) (ruvB) [Streptomyces sp. NBC_00828]
ATGAACTGGGACGACACGACCGACGAGACCGCCGCCGAGCGGCTGGTGGGCTCTGTCGCCGACCGCGAGGACCAGGCCGT
CGAGGCCGCGCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCCGCGAGCAGCTCGACCTCGTTCTCC
GTGCCGCACGCGCGCGTGGCGCCACCGCCGACCATGTGCTCCTCTCGGGCGCCCCAGGGCTCGGCAAGACCACCCTCTCG
ATGATCATCGCGGCCGAGATGGAAGCGCCCATCCGCATCACCAGCGGCCCCGCCATCCAGCACGCCGGAGACCTCGCCGC
GATCCTCTCCTCGCTCCAGGAGGGCGAGGTGCTGTTCCTCGATGAGATCCACCGCATGTCCCGGCCCGCCGAAGAGATGC
TCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCAGGCGCCACCGCCATCCCGCTCGAACTG
CCGCCGTTCACCCTGGTCGGCGCCACCACGCGCGCGGGCCTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGAGCCCGCCGAGCTGGAGCGGGTCATCCACCGTTCGGCGAACCTGCTCGACGTCGAGATCGACA
CCGTAGGGGCAGCCGAGATCGCGGGCCGCTCCAGGGGCACCCCCCGTATCGCCAACCGCCTGCTGCGTCGCGTACGCGAC
TACGCGCAGGTCAAGGCCGACGGCTTCATCACGAAGGACATCGCCTCGGCGGCCCTCGCCGTGTACGAGGTGGACGCGCG
CGGTCTCGACCGCCTGGACCGCGGCGTGCTCGAAGCCCTGCTCAAGCTCTTCGGCGGCGGTCCCGTCGGCCTGTCCACGC
TCGCGGTCGCGGTGGGGGAGGAGCGTGAGACCGTGGAGGAGGTCGCCGAGCCCTTCCTCGTACGGGAGGGCCTGCTCGCC
CGTACTCCCCGTGGCCGGGTGGCGACACCGGCCGCATGGGCGCATCTCGGCCTCACCCCGCCCCGCCAGTCAACCGGCGG
AAAGGGACAAGGGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB AAA lid domain (AAA_lid_4)

(192-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.152

92.697

0.511
  ruvB Synechocystis sp. PCC 6803

54.459

88.202

0.48
  ruvB Streptococcus pneumoniae R6

52.698

88.483

0.466
  ruvB Streptococcus pneumoniae D39

52.698

88.483

0.466
  ruvB Streptococcus pneumoniae TIGR4

52.698

88.483

0.466
  ruvB Helicobacter pylori 26695

50.629

89.326

0.452