Detailed information NTG0787302

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: OG299_RS31165
• Genome accession: NZ_CP130720
• Coordinates: 6827012..6828073 (+)
• Length: 353 a.a.
• NCBI ID: WP_266631017.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01296
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6822012..6833073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG299_RS31135 (OG299_31160)	-	6822612..6823151 (+)	540	WP_266631008.1	hypothetical protein	-
OG299_RS31140 (OG299_31165)	pdxS	6823324..6824241 (+)	918	WP_030294529.1	pyridoxal 5'-phosphate synthase lyase subunit PdxS	-
OG299_RS31145 (OG299_31170)	pdxT	6824250..6824840 (+)	591	WP_266631011.1	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	-
OG299_RS31150 (OG299_31175)	-	6824898..6825650 (+)	753	WP_030765687.1	YebC/PmpR family DNA-binding transcriptional regulator	-
OG299_RS31155 (OG299_31180)	ruvC	6825754..6826284 (+)	531	WP_327363258.1	crossover junction endodeoxyribonuclease RuvC	-
OG299_RS31160 (OG299_31185)	ruvA	6826281..6826901 (+)	621	WP_266631015.1	Holliday junction branch migration protein RuvA	-
OG299_RS31165 (OG299_31190)	ruvB	6827012..6828073 (+)	1062	WP_266631017.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
OG299_RS31170 (OG299_31195)	yajC	6828238..6828741 (+)	504	WP_266631019.1	preprotein translocase subunit YajC	-
OG299_RS31175 (OG299_31200)	secD	6828897..6830681 (+)	1785	WP_266631022.1	protein translocase subunit SecD	-
OG299_RS31180 (OG299_31205)	secF	6830685..6831743 (+)	1059	WP_327363260.1	protein translocase subunit SecF	-
OG299_RS31185 (OG299_31210)	-	6831749..6832291 (+)	543	WP_266633693.1	adenine phosphoribosyltransferase	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37652.91 Da
• Isoelectric Point: 4.8819

>NTDB_id=787302 OG299_RS31165 WP_266631017.1 6827012..6828073(+) (ruvB) [Streptomyces sp. NBC_01296]
MNWDDESDDRIVAAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIA
AEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFT
LVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQV
RADGVINREVAGTALQVYEVDGRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPR
GRVATPAAWAHLGLVPPQNGGSGSSGQQGLFGA

Nucleotide

• Length: 1062 bp

>NTDB_id=787302 OG299_RS31165 WP_266631017.1 6827012..6828073(+) (ruvB) [Streptomyces sp. NBC_01296]
GTGAACTGGGATGACGAGAGCGACGACCGGATCGTGGCGGCGGCGGCAGACGGCGAGGACACCGCCGTCGAGGCGGCCCT
GCGCCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTCGATCTGGTGCTGAAGGCGGCCCGGC
AGCGCGGAGCCACCGCCGATCACGTCCTGCTCTCCGGCGCGCCCGGCCTCGGCAAGACCACCCTCTCCATGATCATCGCC
GCCGAGATGGGCGCGCCCATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGCGATCCTGTCCTC
CCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCA
TGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGGGCCACCGCCATCCCCCTCGAGCTGCCGCCGTTCACC
CTCGTCGGGGCGACGACCCGCGCCGGCCTGCTCCCCCCGCCCCTGCGCGACCGCTTCGGCTTCACCGGGCACATGGAGTT
CTACGCCCCCGAGGAGCTGGAACGCGTCATTCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACACCGCCGGCGCCG
CCGAGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGGGTCCGGGACTACGCGCAGGTC
CGGGCCGACGGCGTGATCAACCGCGAGGTGGCCGGTACCGCCCTGCAGGTGTACGAGGTGGACGGGCGCGGGCTCGACCG
GCTCGACCGGGCCGTGCTCGAAGCCCTGCTCAAGCTGTTCGGCGGCGGTCCCGTCGGGCTGTCCACCCTCGCCGTCGCCG
TCGGCGAGGAGCGCGAGACCGTGGAGGAGGTCGCCGAGCCGTTCCTGGTACGGGAGGGGCTGCTCGCCCGTACTCCCAGG
GGCCGGGTCGCGACCCCCGCCGCATGGGCTCACCTGGGACTCGTCCCGCCGCAGAACGGCGGGAGCGGATCAAGCGGACA
ACAGGGCTTGTTCGGGGCCTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (188-261)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-185)

• RuvB C-terminal winged helix domain (WHD_RuvB) (263-332)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.172	93.768	0.499
ruvB	Streptococcus pneumoniae TIGR4	52.469	91.785	0.482
ruvB	Streptococcus pneumoniae R6	52.469	91.785	0.482
ruvB	Streptococcus pneumoniae D39	52.469	91.785	0.482
ruvB	Synechocystis sp. PCC 6803	52.548	88.952	0.467
ruvB	Helicobacter pylori 26695	48.64	93.768	0.456