Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG736_RS09285 Genome accession   NZ_CP130718
Coordinates   2053366..2054424 (-) Length   352 a.a.
NCBI ID   WP_327182015.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2048366..2059424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS09265 (OG736_09255) - 2049107..2049655 (-) 549 WP_327182012.1 adenine phosphoribosyltransferase -
  OG736_RS09270 (OG736_09260) secF 2049652..2050764 (-) 1113 WP_327182013.1 protein translocase subunit SecF -
  OG736_RS09275 (OG736_09265) secD 2050768..2052546 (-) 1779 WP_327182014.1 protein translocase subunit SecD -
  OG736_RS09280 (OG736_09270) yajC 2052681..2053190 (-) 510 WP_142269374.1 preprotein translocase subunit YajC -
  OG736_RS09285 (OG736_09275) ruvB 2053366..2054424 (-) 1059 WP_327182015.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG736_RS09290 (OG736_09280) ruvA 2054434..2055039 (-) 606 WP_020128831.1 Holliday junction branch migration protein RuvA -
  OG736_RS09295 (OG736_09285) ruvC 2055036..2055584 (-) 549 WP_327182016.1 crossover junction endodeoxyribonuclease RuvC -
  OG736_RS09300 (OG736_09290) - 2055743..2056495 (-) 753 WP_028806682.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG736_RS09305 (OG736_09295) pdxT 2056570..2057181 (-) 612 WP_327182017.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG736_RS09310 (OG736_09300) pdxS 2057190..2058101 (-) 912 WP_171396135.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OG736_RS09315 - 2058212..2058790 (-) 579 WP_327187565.1 DUF6210 family protein -
  OG736_RS09320 (OG736_09305) - 2058700..2059242 (-) 543 WP_327182018.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37841.18 Da        Isoelectric Point: 4.8374

>NTDB_id=787157 OG736_RS09285 WP_327182015.1 2053366..2054424(-) (ruvB) [Streptomyces sp. NBC_01334]
MNWDDTTEETAPERLVGSVADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELQRVIHRSADLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGRITRAIAEAALKVYEVDGRGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLSPAQGSGQQDLFGA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=787157 OG736_RS09285 WP_327182015.1 2053366..2054424(-) (ruvB) [Streptomyces sp. NBC_01334]
GTGAACTGGGACGACACGACCGAAGAGACCGCCCCGGAGCGGTTGGTCGGCTCTGTCGCCGACCGTGAGGACCAGGCCGT
CGAGGCCGCGCTGCGCCCCAAGGACCTGGGCGAGTTCATCGGCCAGGAGAAGGTCCGAGAACAGCTCGACCTCGTCCTGC
GCGCCGCACGCGCGCGGGGCGCCACCGCCGACCATGTGCTGCTCTCCGGCGCCCCGGGCCTCGGCAAGACGACTCTCTCG
ATGATCATCGCCGCCGAGATGGGCGCCCCGATCCGCATCACCAGCGGCCCCGCCATCCAGCACGCGGGCGACCTCGCGGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCGATCCCGCTCGAGCTG
CCCCCCTTCACGCTGGTCGGCGCCACCACGCGCGCGGGCCTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGTTTCACGGC
GCACATGGAGTTCTACGAGCCCGCCGAACTGCAGCGCGTCATCCACCGCTCCGCGGACCTCCTCGACGTGGAGATCGACA
CCGACGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGAACCCCCCGGATCGCCAACCGCCTGCTGCGCCGCGTACGCGAC
TACGCGCAGGTCAAGGCCGACGGGCGGATCACCCGCGCGATCGCGGAGGCCGCGCTGAAGGTCTACGAGGTGGACGGTCG
CGGCCTGGACCGGCTCGACCGCGGGGTCCTGGAGGCCCTGCTGAAGCTGTTCGGCGGCGGCCCGGTCGGTCTGTCCACGC
TCGCCGTGGCGGTGGGGGAGGAGCGTGAGACCGTGGAGGAGGTGGCCGAGCCCTTCCTGGTGAGGGAGGGACTGCTCGCC
CGTACCCCGCGAGGACGGGTGGCGACCCCGGCCGCGTGGGCGCACCTCGGCCTCAGCCCGGCTCAGGGAAGTGGACAACA
GGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB AAA lid domain (AAA_lid_4)

(192-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.828

92.614

0.517
  ruvB Synechocystis sp. PCC 6803

54.313

88.92

0.483
  ruvB Streptococcus pneumoniae TIGR4

52.5

90.909

0.477
  ruvB Streptococcus pneumoniae R6

52.5

90.909

0.477
  ruvB Streptococcus pneumoniae D39

52.5

90.909

0.477
  ruvB Helicobacter pylori 26695

50.314

90.341

0.455