Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG202_RS09825 Genome accession   NZ_CP130714
Coordinates   2225781..2226875 (-) Length   364 a.a.
NCBI ID   WP_327730573.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2220781..2231875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG202_RS09805 (OG202_09815) - 2221568..2222116 (-) 549 WP_326584098.1 adenine phosphoribosyltransferase -
  OG202_RS09810 (OG202_09820) secF 2222113..2223207 (-) 1095 WP_326584097.1 protein translocase subunit SecF -
  OG202_RS09815 (OG202_09825) secD 2223209..2224966 (-) 1758 WP_327730574.1 protein translocase subunit SecD -
  OG202_RS09820 (OG202_09830) yajC 2225100..2225606 (-) 507 WP_326584095.1 preprotein translocase subunit YajC -
  OG202_RS09825 (OG202_09835) ruvB 2225781..2226875 (-) 1095 WP_327730573.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG202_RS09830 (OG202_09840) ruvA 2226927..2227532 (-) 606 WP_326584093.1 Holliday junction branch migration protein RuvA -
  OG202_RS09835 (OG202_09845) ruvC 2227529..2228095 (-) 567 WP_326585905.1 crossover junction endodeoxyribonuclease RuvC -
  OG202_RS09840 (OG202_09850) - 2228445..2228750 (+) 306 WP_326584092.1 hypothetical protein -
  OG202_RS09845 (OG202_09855) - 2228827..2229579 (-) 753 WP_326584091.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG202_RS09850 (OG202_09860) pdxT 2229629..2230237 (-) 609 WP_326584090.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG202_RS09855 (OG202_09865) pdxS 2230244..2231161 (-) 918 WP_152167511.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38750.14 Da        Isoelectric Point: 4.6648

>NTDB_id=786902 OG202_RS09825 WP_327730573.1 2225781..2226875(-) (ruvB) [Streptomyces sp. NBC_00310]
MNWDDTTDETAPEGLVGPAAERLVGSVADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP
GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPG
ATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSANLLDVEIDTAGAAEIAGRSRGTPRISN
RLLRRVRDYAQVKADGVITRDIAAAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF
LVREGLLARTPRGRVATPAAWAHLGLTPPRGTTGGNGQQDLFGA

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=786902 OG202_RS09825 WP_327730573.1 2225781..2226875(-) (ruvB) [Streptomyces sp. NBC_00310]
ATGAACTGGGACGACACGACCGACGAGACCGCCCCCGAGGGGCTCGTCGGTCCCGCCGCGGAGCGGCTGGTGGGCTCTGT
CGCCGATGGTGAGGACCAGGCCGTCGAGGCAGCCCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCC
GCGAGCAGCTCGACCTGGTCCTGCGGGCGGCACGCGCGCGGGGTGCCACCGCCGACCACGTCCTGCTCTCCGGCGCCCCG
GGCCTCGGCAAGACCACGCTCTCGATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCCGGCCCCGCCAT
CCAGCACGCCGGCGACCTGGCCGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCA
TGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGC
GCCACGGCGATCCCCCTCGAACTACCGCCCTTCACCCTGGTCGGCGCCACCACACGCGCGGGTCTGCTGCCGCCGCCGCT
GCGCGACCGCTTCGGCTTCACCGCGCACATGGAGTTCTACGAACCTGCCGAGCTGGAGCGCGTCATCCACCGCTCGGCGA
ACCTCCTCGACGTCGAGATCGACACGGCCGGCGCCGCCGAGATCGCGGGCCGCTCACGCGGCACACCCCGTATCTCCAAC
CGTCTGCTGCGCCGCGTACGGGACTACGCGCAGGTCAAGGCGGACGGCGTCATCACGCGCGACATCGCCGCGGCCGCCCT
CGCCGTCTACGAGGTGGACGCCCGCGGCCTCGACCGCCTCGACCGGGGCGTGCTCGAAGCCCTGCTCAAGCTCTTCGGCG
GCGGCCCCGTCGGCCTCTCGACGCTCGCCGTCGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAACCCTTC
CTCGTCCGCGAGGGACTGCTCGCCCGGACCCCCCGGGGCCGGGTGGCGACGCCCGCCGCTTGGGCCCATCTCGGACTCAC
CCCGCCACGCGGCACGACCGGCGGAAACGGACAACAGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(39-197)

RuvB AAA lid domain (AAA_lid_4)

(200-273)

RuvB C-terminal winged helix domain (WHD_RuvB)

(275-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.152

90.659

0.5
  ruvB Synechocystis sp. PCC 6803

53.822

86.264

0.464
  ruvB Streptococcus pneumoniae TIGR4

52.16

89.011

0.464
  ruvB Streptococcus pneumoniae R6

52.16

89.011

0.464
  ruvB Streptococcus pneumoniae D39

52.16

89.011

0.464
  ruvB Helicobacter pylori 26695

50

87.363

0.437