Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q3Y56_RS29225 Genome accession   NZ_CP130713
Coordinates   6688823..6689914 (+) Length   363 a.a.
NCBI ID   WP_304464773.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6683823..6694914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS29195 (Q3Y56_29195) - 6684227..6684766 (+) 540 WP_304464769.1 hypothetical protein -
  Q3Y56_RS29200 (Q3Y56_29200) pdxS 6685092..6685940 (+) 849 WP_304465849.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  Q3Y56_RS29205 (Q3Y56_29205) pdxT 6686054..6686644 (+) 591 WP_304464770.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  Q3Y56_RS29210 (Q3Y56_29210) - 6686707..6687456 (+) 750 WP_304464771.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q3Y56_RS29215 (Q3Y56_29215) ruvC 6687572..6688144 (+) 573 WP_304465850.1 crossover junction endodeoxyribonuclease RuvC -
  Q3Y56_RS29220 (Q3Y56_29220) ruvA 6688141..6688767 (+) 627 WP_304464772.1 Holliday junction branch migration protein RuvA -
  Q3Y56_RS29225 (Q3Y56_29225) ruvB 6688823..6689914 (+) 1092 WP_304464773.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q3Y56_RS29230 (Q3Y56_29230) yajC 6690098..6690577 (+) 480 WP_304465851.1 preprotein translocase subunit YajC -
  Q3Y56_RS29235 (Q3Y56_29235) secD 6690764..6692521 (+) 1758 WP_304464774.1 protein translocase subunit SecD -
  Q3Y56_RS29240 (Q3Y56_29240) secF 6692523..6693671 (+) 1149 WP_304464775.1 protein translocase subunit SecF -
  Q3Y56_RS29245 (Q3Y56_29245) - 6693668..6694222 (+) 555 WP_304464776.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38343.84 Da        Isoelectric Point: 4.8838

>NTDB_id=786884 Q3Y56_RS29225 WP_304464773.1 6688823..6689914(+) (ruvB) [Streptomyces sp. XD-27]
MNWDDEPVPAPATGLPAAGDRLVGAAADGEEQAIEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG
LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVLHRSAHLLDVTLDPEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKADGLITAEIAGRALEVYDVDARGLDRLDRGVLTALLTLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGIAPPRQGAGGGGQTGLFEA

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=786884 Q3Y56_RS29225 WP_304464773.1 6688823..6689914(+) (ruvB) [Streptomyces sp. XD-27]
GTGAACTGGGATGACGAGCCCGTACCCGCGCCCGCGACCGGCCTGCCCGCCGCAGGCGACCGGCTCGTCGGCGCGGCCGC
CGACGGCGAGGAGCAGGCCATCGAGGCCGCGCTGCGCCCGAAGGACCTCGGCGAATTCGTCGGCCAGGAGCGCGTCCGCG
AGCAGCTCGACCTCGTCCTGAAGGCGGCGCGGCAGCGCGGCGGCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCGGGC
CTCGGCAAGACCACCCTCTCCATGATCATCGCGGCCGAGATGGGCGCCCCGATCCGCATCACCTCCGGGCCCGCCATCCA
GCACGCCGGCGACCTCGCCGCGATCCTGTCCTCGCTCACCGAGGGCGAGGTGCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTGTACATGGCCATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGTGCC
ACCGCGATCCCGCTCGAACTGCCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGGCTGCTGCCGCCGCCGCTGCG
CGACCGCTTCGGCTTCACCGGCCACATGGAGTTCTACGCCCCGGCCGAGCTGGAGCGCGTCCTCCACCGCTCCGCCCACC
TGCTCGACGTCACGCTGGATCCCGAGGGCGCCGCCGAGATCGCCGGCCGGTCCCGGGGCACGCCGCGCATCGCCAACCGG
CTGCTGCGCCGGGTCCGGGATTACGCCCAGGTCAAGGCGGACGGCCTGATCACCGCCGAGATCGCCGGCCGGGCCCTGGA
GGTGTACGACGTGGACGCCCGCGGCCTGGACCGGCTGGACCGCGGGGTGCTGACCGCCCTGCTCACCCTGTTCGGCGGCG
GCCCGGTCGGCCTGTCCACCCTCGCCGTCGCGGTGGGGGAGGAGCGCGAGACGGTGGAGGAGGTCGCGGAGCCCTTCCTG
GTCCGCGAGGGCCTGCTGGCCCGTACGCCGCGCGGCCGGGTCGCCACCCCCGCGGCCTGGGCCCACCTCGGGATCGCCCC
GCCGCGGCAGGGCGCCGGCGGGGGCGGACAGACCGGCTTGTTCGAAGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.242

90.909

0.493
  ruvB Streptococcus pneumoniae TIGR4

52.16

89.256

0.466
  ruvB Streptococcus pneumoniae R6

52.16

89.256

0.466
  ruvB Streptococcus pneumoniae D39

52.16

89.256

0.466
  ruvB Synechocystis sp. PCC 6803

52.229

86.501

0.452
  ruvB Helicobacter pylori 26695

48.773

89.807

0.438