Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q5R37_RS13105 Genome accession   NZ_CP130706
Coordinates   2714802..2715812 (-) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain DDG220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2709802..2720812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R37_RS13085 (Q5R37_13085) mepM 2710769..2712091 (-) 1323 WP_001184045.1 murein DD-endopeptidase MepM -
  Q5R37_RS13090 (Q5R37_13090) znuA 2712107..2713039 (-) 933 WP_001300644.1 zinc ABC transporter substrate-binding protein ZnuA -
  Q5R37_RS13095 (Q5R37_13095) znuC 2713118..2713873 (+) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  Q5R37_RS13100 (Q5R37_13100) znuB 2713870..2714655 (+) 786 WP_000571457.1 zinc ABC transporter permease subunit ZnuB -
  Q5R37_RS13105 (Q5R37_13105) ruvB 2714802..2715812 (-) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q5R37_RS13110 (Q5R37_13110) ruvA 2715821..2716432 (-) 612 WP_000580329.1 Holliday junction branch migration protein RuvA -
  Q5R37_RS13115 (Q5R37_13115) yobI 2716571..2716636 (-) 66 WP_010723105.1 stress response small protein YobI -
  Q5R37_RS13120 (Q5R37_13120) yebB 2716707..2717309 (+) 603 WP_001024932.1 YebB family permuted papain-like enzyme -
  Q5R37_RS13125 (Q5R37_13125) ruvC 2717311..2717832 (-) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  Q5R37_RS13130 (Q5R37_13130) yebC 2717867..2718607 (-) 741 WP_000907248.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q5R37_RS13135 (Q5R37_13135) nudB 2718636..2719088 (-) 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=786699 Q5R37_RS13105 WP_000568519.1 2714802..2715812(-) (ruvB) [Escherichia coli strain DDG220]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=786699 Q5R37_RS13105 WP_000568519.1 2714802..2715812(-) (ruvB) [Escherichia coli strain DDG220]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCCAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATTTGGCTGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCCGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGACCTGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494