Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q5R05_RS03045 Genome accession   NZ_CP130703
Coordinates   557130..558188 (+) Length   352 a.a.
NCBI ID   WP_305068485.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 552130..563188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS03015 (Q5R05_03015) dltC 552679..552915 (+) 237 WP_014974030.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  Q5R05_RS03020 (Q5R05_03020) dltD 552920..554203 (+) 1284 WP_135197248.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  Q5R05_RS03025 (Q5R05_03025) - 554230..554949 (-) 720 WP_014974032.1 YslB family protein -
  Q5R05_RS03030 (Q5R05_03030) racE 555040..555885 (+) 846 WP_135197249.1 glutamate racemase -
  Q5R05_RS03035 (Q5R05_03035) - 555885..556490 (+) 606 WP_135197250.1 XTP/dITP diphosphatase -
  Q5R05_RS03040 (Q5R05_03040) - 556496..557029 (+) 534 WP_135197251.1 YfcE family phosphodiesterase -
  Q5R05_RS03045 (Q5R05_03045) ruvB 557130..558188 (+) 1059 WP_305068485.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q5R05_RS03050 (Q5R05_03050) - 558188..559045 (+) 858 WP_014974037.1 metallophosphoesterase family protein -
  Q5R05_RS03055 (Q5R05_03055) queA 559042..560109 (+) 1068 WP_014974038.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  Q5R05_RS03060 (Q5R05_03060) ruvA 560230..560814 (+) 585 WP_014974039.1 Holliday junction branch migration protein RuvA Machinery gene
  Q5R05_RS03065 (Q5R05_03065) - 560847..561479 (-) 633 WP_014974040.1 deoxynucleoside kinase -
  Q5R05_RS03070 (Q5R05_03070) mscL 561577..561960 (-) 384 WP_014974041.1 large-conductance mechanosensitive channel protein MscL -
  Q5R05_RS03075 (Q5R05_03075) - 562299..562487 (+) 189 WP_014974042.1 hypothetical protein -
  Q5R05_RS03080 (Q5R05_03080) - 562510..563001 (+) 492 WP_014974043.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39375.74 Da        Isoelectric Point: 4.5941

>NTDB_id=786622 Q5R05_RS03045 WP_305068485.1 557130..558188(+) (ruvB) [Leuconostoc carnosum strain AMS1]
MENQQEPQFNQWYETNSEADQLLRDAAANATEQHDELSLRPQFLREYIGQAALKDELSVYISAARQREEALDHVLLFGPP
GLGKTTLAMIIANEMGVNIKTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPTNIEEIMYSAMEDYFVDIMVGQGPT
ARAVHFPLPPFTLIGATTRPGMLSKPLRDRFGIINSMAYYTSDELQEIVVRSSDIFNAPIKPEGAYEIALRSRGTPRIAN
RLLKRVRDFAQVQGKDAIDKGIVDIALDKLRVDNRGLDETDHKFLGTMIDYYNGGPVGLSTIAANIGEEAETLESMVEPY
LLQIGFLQRTPRGRVVTESAYRHLNVPYQKEL

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=786622 Q5R05_RS03045 WP_305068485.1 557130..558188(+) (ruvB) [Leuconostoc carnosum strain AMS1]
ATGGAAAATCAACAGGAACCACAATTTAATCAATGGTATGAGACGAATAGTGAGGCTGATCAACTGTTGCGTGATGCGGC
TGCCAATGCCACAGAACAACATGATGAGCTTTCTTTGCGACCACAATTTTTGCGTGAATATATAGGTCAAGCTGCCTTAA
AAGATGAATTAAGTGTTTATATTTCAGCGGCTAGGCAGCGTGAAGAGGCATTAGACCATGTGTTGCTTTTTGGACCACCC
GGATTAGGTAAAACAACATTGGCAATGATTATTGCTAATGAAATGGGTGTTAACATTAAAACAACATCTGGACCTGCCAT
TGAAAAACCTGGTGATTTAGTTGCGTTACTCAATGAATTAGAACCAGGGGATATTTTGTTTATTGATGAAATCCATCGGT
TACCAACTAACATCGAAGAAATTATGTATTCAGCCATGGAAGATTATTTTGTTGATATTATGGTGGGACAAGGTCCTACG
GCACGTGCGGTTCATTTTCCTTTACCACCGTTTACTCTCATCGGGGCGACAACACGTCCAGGGATGCTTTCTAAGCCATT
ACGTGATCGGTTTGGTATTATCAATTCGATGGCATATTATACATCAGATGAACTGCAAGAAATTGTCGTACGTTCATCAG
ATATTTTTAACGCACCTATCAAACCAGAAGGTGCCTACGAGATTGCCCTACGGTCGCGTGGTACACCACGTATCGCCAAT
CGATTGTTGAAACGTGTACGTGATTTTGCACAAGTTCAGGGTAAAGATGCCATTGATAAGGGAATTGTTGACATTGCCTT
AGATAAATTGCGTGTTGATAATCGTGGTTTAGATGAAACGGATCACAAATTTTTAGGTACGATGATTGATTATTATAATG
GCGGACCAGTGGGTCTAAGTACAATAGCGGCTAATATTGGTGAAGAGGCTGAAACCCTTGAATCAATGGTGGAACCTTAT
TTGTTACAGATTGGTTTTTTGCAACGGACACCACGCGGTCGTGTGGTGACAGAATCCGCATATAGACATCTCAATGTACC
CTATCAAAAGGAACTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(275-345)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(39-196)

RuvB AAA lid domain (AAA_lid_4)

(200-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae R6

64.688

90.909

0.588
  ruvB Streptococcus pneumoniae D39

64.688

90.909

0.588
  ruvB Streptococcus pneumoniae TIGR4

64.375

90.909

0.585
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.856

92.898

0.565
  ruvB Synechocystis sp. PCC 6803

55.732

89.205

0.497
  ruvB Helicobacter pylori 26695

52.215

89.773

0.469