Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   Q5R05_RS01265 Genome accession   NZ_CP130703
Coordinates   228191..228601 (+) Length   136 a.a.
NCBI ID   WP_223822752.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain AMS1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223191..233601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS01250 (Q5R05_01250) - 224739..225710 (+) 972 WP_014973745.1 Ppx/GppA family phosphatase -
  Q5R05_RS01255 (Q5R05_01255) - 225751..226386 (-) 636 WP_014973746.1 YigZ family protein -
  Q5R05_RS01260 (Q5R05_01260) comFA 226656..227933 (+) 1278 WP_135198017.1 DEAD/DEAH box helicase Machinery gene
  Q5R05_RS01265 (Q5R05_01265) comFC/cflB 228191..228601 (+) 411 WP_223822752.1 ComF family protein Machinery gene
  Q5R05_RS01270 (Q5R05_01270) raiA 228684..229226 (+) 543 WP_014973749.1 ribosome-associated translation inhibitor RaiA -
  Q5R05_RS01275 (Q5R05_01275) - 229415..230965 (+) 1551 WP_014973750.1 ABC transporter permease -
  Q5R05_RS01280 (Q5R05_01280) - 231047..231637 (+) 591 WP_014973751.1 TetR/AcrR family transcriptional regulator -
  Q5R05_RS01285 (Q5R05_01285) rpmG 231690..231839 (+) 150 WP_014973752.1 50S ribosomal protein L33 -
  Q5R05_RS01290 (Q5R05_01290) secE 231851..232024 (+) 174 WP_014973753.1 preprotein translocase subunit SecE -
  Q5R05_RS01295 (Q5R05_01295) nusG 232142..232771 (+) 630 WP_014973754.1 transcription termination/antitermination protein NusG -
  Q5R05_RS01300 (Q5R05_01300) rplK 232884..233348 (+) 465 WP_014973755.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15631.12 Da        Isoelectric Point: 10.3314

>NTDB_id=786608 Q5R05_RS01265 WP_223822752.1 228191..228601(+) (comFC/cflB) [Leuconostoc carnosum strain AMS1]
MQRYKFNGDYSLRQIFNHELIQYVNNMAIDLVVVIPISEYTMMTRGFNQTVGLFEGVTLSDLLKVKAKNKSHQSQFNRKG
RMMRTQPFTVSKSLPLHNKRVLLVDDVYTTGNTLYHAADLLYDLGAKNVKSLSLAR

Nucleotide


Download         Length: 411 bp        

>NTDB_id=786608 Q5R05_RS01265 WP_223822752.1 228191..228601(+) (comFC/cflB) [Leuconostoc carnosum strain AMS1]
ATGCAACGATACAAATTTAATGGTGATTACAGTTTGCGTCAGATATTTAATCATGAATTAATCCAGTACGTGAATAATAT
GGCTATAGATCTAGTTGTAGTTATTCCCATTAGTGAGTACACCATGATGACACGAGGATTTAATCAGACAGTTGGTCTAT
TTGAAGGTGTGACGTTGAGTGACTTACTAAAAGTCAAAGCTAAAAATAAAAGTCACCAGTCACAATTTAATAGGAAAGGT
CGCATGATGCGGACACAACCATTTACAGTGAGCAAATCATTACCACTACACAACAAAAGAGTGTTGCTTGTAGATGATGT
CTATACAACAGGGAACACATTGTATCATGCAGCAGACTTATTGTACGATTTAGGTGCGAAAAATGTGAAAAGTCTATCGT
TAGCACGTTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(57-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

38.235

100

0.382
  comFC/cflB Streptococcus pneumoniae TIGR4

37.313

98.529

0.368
  comFC/cflB Streptococcus pneumoniae Rx1

37.313

98.529

0.368
  comFC/cflB Streptococcus pneumoniae D39

37.313

98.529

0.368
  comFC/cflB Streptococcus pneumoniae R6

37.313

98.529

0.368
  comFC Latilactobacillus sakei subsp. sakei 23K

35.252

100

0.36