Detailed information NTG0786607

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: Q5R05_RS01260
• Genome accession: NZ_CP130703
• Coordinates: 226656..227933 (+)
• Length: 425 a.a.
• NCBI ID: WP_135198017.1
• Uniprot ID: -
• Organism: Leuconostoc carnosum strain AMS1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 221656..232933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5R05_RS01245 (Q5R05_01245)	-	222607..224742 (+)	2136	WP_014973744.1	RNA degradosome polyphosphate kinase	-
Q5R05_RS01250 (Q5R05_01250)	-	224739..225710 (+)	972	WP_014973745.1	Ppx/GppA family phosphatase	-
Q5R05_RS01255 (Q5R05_01255)	-	225751..226386 (-)	636	WP_014973746.1	YigZ family protein	-
Q5R05_RS01260 (Q5R05_01260)	comFA	226656..227933 (+)	1278	WP_135198017.1	DEAD/DEAH box helicase	Machinery gene
Q5R05_RS01265 (Q5R05_01265)	comFC/cflB	228191..228601 (+)	411	WP_223822752.1	ComF family protein	Machinery gene
Q5R05_RS01270 (Q5R05_01270)	raiA	228684..229226 (+)	543	WP_014973749.1	ribosome-associated translation inhibitor RaiA	-
Q5R05_RS01275 (Q5R05_01275)	-	229415..230965 (+)	1551	WP_014973750.1	ABC transporter permease	-
Q5R05_RS01280 (Q5R05_01280)	-	231047..231637 (+)	591	WP_014973751.1	TetR/AcrR family transcriptional regulator	-
Q5R05_RS01285 (Q5R05_01285)	rpmG	231690..231839 (+)	150	WP_014973752.1	50S ribosomal protein L33	-
Q5R05_RS01290 (Q5R05_01290)	secE	231851..232024 (+)	174	WP_014973753.1	preprotein translocase subunit SecE	-
Q5R05_RS01295 (Q5R05_01295)	nusG	232142..232771 (+)	630	WP_014973754.1	transcription termination/antitermination protein NusG	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 48447.27 Da
• Isoelectric Point: 10.4155

>NTDB_id=786607 Q5R05_RS01260 WP_135198017.1 226656..227933(+) (comFA) [Leuconostoc carnosum strain AMS1]
MEEYYGRQLVQPKIKNVPAYVSVAATFNNHICQRCGQTDIEKLPNYHFYCRACLALGRVSSRDVLLSLPEPNLFDGHDIL
SWSGKLTAKQQEVSNELIATLKEKNEHLVWAVTGAGKTEMLFPVIHKALTQRYRVGIVSPRVDVIIELAPRLQAAFSKTD
MVVLHGEQTQDYRYTPLVLATTHQMLRFKSAFDLLIVDEVDSFPYAGDKMLSYAVQQAKKATGTLIFLTATPTKQLQKRV
RRGSLKTSYLPLRYHQHLLPVIKTTLVGNWRRKIPKQLVKQLTHFQRTEQRFLIFVPKVADLKKVYDQINKHVPHLKGDY
VHAADSRRQEKVQAMRDYQLQYLVTTTILERGVTFPGIDVLILGADDTTFSENALVQIAGRVGRKNDRPTGLVRAYVQHI
SLNVVAAQRQIKQMNHRGKKLGGRK

Nucleotide

• Length: 1278 bp

>NTDB_id=786607 Q5R05_RS01260 WP_135198017.1 226656..227933(+) (comFA) [Leuconostoc carnosum strain AMS1]
ATGGAAGAATATTACGGCAGGCAACTTGTACAACCAAAAATAAAAAATGTGCCAGCTTATGTATCAGTAGCGGCGACGTT
TAATAATCACATTTGTCAACGCTGCGGGCAAACTGATATTGAAAAACTACCAAACTATCATTTTTATTGCCGTGCTTGTT
TAGCTTTAGGACGCGTTAGTTCGCGTGATGTTTTGTTATCTTTGCCAGAGCCGAATCTCTTTGATGGTCACGATATTTTA
AGTTGGTCAGGAAAACTAACTGCGAAACAACAAGAAGTTAGTAATGAACTTATCGCGACATTAAAAGAAAAAAATGAACA
TTTAGTTTGGGCAGTTACGGGTGCAGGAAAGACTGAAATGTTGTTTCCGGTGATACACAAAGCGTTGACGCAACGATATC
GTGTTGGGATTGTTTCACCTAGGGTCGACGTGATTATCGAATTAGCGCCACGATTACAGGCTGCCTTTTCAAAAACTGAT
ATGGTCGTGTTACACGGAGAACAAACACAAGACTATCGCTATACACCTTTGGTTTTAGCAACAACACATCAGATGTTACG
TTTTAAATCTGCTTTTGATTTGTTAATTGTTGATGAAGTTGATAGCTTTCCTTACGCAGGCGATAAAATGTTATCTTATG
CGGTGCAACAAGCTAAAAAGGCTACTGGAACGTTGATTTTTCTAACAGCGACACCTACAAAACAATTACAAAAACGTGTT
CGGAGAGGTTCATTAAAAACATCTTACTTACCGTTGAGGTATCATCAACATTTGTTACCGGTAATAAAAACAACATTAGT
TGGTAATTGGCGACGAAAGATACCGAAGCAGTTGGTCAAACAACTGACTCATTTTCAACGTACAGAACAACGTTTTTTAA
TATTTGTGCCGAAAGTAGCTGATTTAAAAAAAGTGTATGATCAGATTAACAAGCATGTGCCACATTTAAAAGGCGACTAT
GTTCATGCGGCAGATAGTAGACGACAAGAAAAAGTGCAAGCTATGCGAGATTATCAGTTGCAATATCTTGTCACCACAAC
GATTTTGGAACGAGGTGTCACTTTTCCAGGCATTGATGTGTTAATTTTAGGCGCTGATGATACGACTTTTAGTGAAAATG
CTTTAGTTCAAATTGCCGGACGCGTTGGGCGTAAAAATGATCGGCCAACGGGATTGGTACGAGCTTACGTGCAACATATT
AGCTTAAATGTGGTAGCTGCTCAAAGGCAAATTAAACAAATGAATCATCGAGGTAAGAAATTAGGAGGACGAAAATGA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (277-385)

• Type III restriction enzyme, res subunit (ResIII) (85-233)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	42.627	100	0.435
comFA	Latilactobacillus sakei subsp. sakei 23K	42.823	98.353	0.421
comFA	Lactococcus lactis subsp. cremoris KW2	39.904	97.882	0.391
comFA/cflA	Streptococcus pneumoniae Rx1	41.837	92.235	0.386
comFA/cflA	Streptococcus pneumoniae D39	41.837	92.235	0.386
comFA/cflA	Streptococcus pneumoniae R6	41.837	92.235	0.386
comFA/cflA	Streptococcus pneumoniae TIGR4	41.837	92.235	0.386
comFA/cflA	Streptococcus mitis SK321	41.837	92.235	0.386
comFA/cflA	Streptococcus mitis NCTC 12261	41.071	92.235	0.379