Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q4V64_RS09300 Genome accession   NZ_CP130630
Coordinates   2193998..2195068 (-) Length   356 a.a.
NCBI ID   WP_124443771.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2188998..2200068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS09280 (Q4V64_09275) - 2189762..2190301 (-) 540 WP_124443775.1 adenine phosphoribosyltransferase -
  Q4V64_RS09285 (Q4V64_09280) secF 2190298..2191422 (-) 1125 WP_124443774.1 protein translocase subunit SecF -
  Q4V64_RS09290 (Q4V64_09285) secD 2191426..2193180 (-) 1755 WP_124443773.1 protein translocase subunit SecD -
  Q4V64_RS09295 (Q4V64_09290) yajC 2193314..2193823 (-) 510 WP_124443772.1 preprotein translocase subunit YajC -
  Q4V64_RS09300 (Q4V64_09295) ruvB 2193998..2195068 (-) 1071 WP_124443771.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q4V64_RS09305 (Q4V64_09300) ruvA 2195094..2195699 (-) 606 WP_124443770.1 Holliday junction branch migration protein RuvA -
  Q4V64_RS09310 (Q4V64_09305) ruvC 2195696..2196226 (-) 531 WP_172629483.1 crossover junction endodeoxyribonuclease RuvC -
  Q4V64_RS09315 (Q4V64_09310) - 2196343..2197095 (-) 753 WP_095754408.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q4V64_RS09320 (Q4V64_09315) pdxT 2197144..2197752 (-) 609 WP_124443769.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  Q4V64_RS09325 (Q4V64_09320) pdxS 2197793..2198704 (-) 912 WP_124443768.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  Q4V64_RS09330 (Q4V64_09325) - 2198832..2199374 (-) 543 WP_124443767.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38170.58 Da        Isoelectric Point: 4.8214

>NTDB_id=786244 Q4V64_RS09300 WP_124443771.1 2193998..2195068(-) (ruvB) [Streptomyces sp. NL15-2K]
MNWDDTTDTPASERLVGPVADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPVELERVIHRSAHLLDVEIEADGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGLITRDIAAAALAVYEVDARGLDRLDRGVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRSAAAGNGQQDLFGT

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=786244 Q4V64_RS09300 WP_124443771.1 2193998..2195068(-) (ruvB) [Streptomyces sp. NL15-2K]
ATGAACTGGGACGACACGACCGACACCCCCGCCTCCGAGCGGCTGGTGGGCCCTGTCGCCGACGGTGAGGACCAGGCCGT
CGAGGCCGCCCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTCGACCTCGTCCTGC
GCGCCGCACGCGCGCGGGGGGCCACCGCCGACCATGTGCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACCCTGTCG
ATGATCATCGCCGCCGAGATGAACGCCCCGATCCGCATCACCAGCGGGCCCGCCATCCAGCACGCCGGCGACCTCGCCGC
CATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCGCTGGAACTG
CCGCCCTTCACCCTGGTCGGCGCCACCACGCGCGCGGGCCTGCTGCCACCGCCGCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGAACCCGTCGAGCTGGAGCGCGTCATCCACCGCTCGGCGCACCTGCTGGACGTGGAGATCGAGG
CCGACGGCGCCGCCGAGATCGCCGGCCGCTCGCGCGGCACCCCCCGTATCGCCAACCGTCTGCTGCGCCGCGTCCGCGAC
TACGCGCAGGTCAAGGCCGACGGTCTGATCACGCGCGACATCGCCGCGGCGGCCCTCGCCGTCTACGAGGTCGACGCCCG
CGGCCTCGACCGTCTCGACCGGGGCGTTCTTCAGGCCCTGCTCAAGCTGTTCGGCGGCGGACCCGTCGGCCTGTCCACGC
TGGCGGTCGCGGTGGGGGAGGAGCGTGAGACCGTGGAGGAGGTCGCCGAGCCCTTCCTGGTCCGGGAGGGGCTGCTCGCC
CGTACACCGCGCGGTCGCGTCGCCACCCCGGCCGCATGGGCGCATCTCGGCCTCACCCCGCCCCGTTCGGCGGCCGCTGG
AAACGGACAACAGGACCTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(192-265)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.545

92.697

0.506
  ruvB Synechocystis sp. PCC 6803

54.459

88.202

0.48
  ruvB Streptococcus pneumoniae TIGR4

52.532

88.764

0.466
  ruvB Streptococcus pneumoniae R6

52.532

88.764

0.466
  ruvB Streptococcus pneumoniae D39

52.532

88.764

0.466
  ruvB Helicobacter pylori 26695

50.47

89.607

0.452