Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PGW99_RS10685 Genome accession   NZ_CP117520
Coordinates   2226605..2227171 (-) Length   188 a.a.
NCBI ID   WP_273777661.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2221605..2232171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10665 - 2222137..2222979 (-) 843 WP_273777657.1 methyltransferase domain-containing protein -
  PGW99_RS10670 - 2222986..2224284 (-) 1299 WP_273777658.1 FAD-dependent oxidoreductase -
  PGW99_RS10675 - 2224733..2225608 (-) 876 WP_273777659.1 pirin family protein -
  PGW99_RS10680 ahpC 2225818..2226381 (-) 564 WP_273777660.1 alkyl hydroperoxide reductase subunit C -
  PGW99_RS10685 ssb 2226605..2227171 (-) 567 WP_273777661.1 single-stranded DNA-binding protein Machinery gene
  PGW99_RS10690 - 2227223..2228587 (-) 1365 WP_273777662.1 MFS transporter -
  PGW99_RS10695 - 2228708..2229790 (-) 1083 WP_273777663.1 DUF475 domain-containing protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20857.78 Da        Isoelectric Point: 6.4831

>NTDB_id=786241 PGW99_RS10685 WP_273777661.1 2226605..2227171(-) (ssb) [Acinetobacter sp. GSS19]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWMDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRPQGEQGMGGDTGFNQPRFNNNPQGGYGQQNNNANQPNPSYGQNTGYGN
NNPGGFAPKAPQAAPTPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=786241 PGW99_RS10685 WP_273777661.1 2226605..2227171(-) (ssb) [Acinetobacter sp. GSS19]
ATGCGTGGTGTTAATAAGGTAATTTTAGTCGGTACGTTGGGACGTGATCCAGAAACTAAAACTTTTCCAAATGGTGGATC
TTTAACTCAATTTTCAATTGCGACCAGTGAATCCTGGATGGATAAAAATACCGGTGAGCGAAAAGAACAAACAGAATGGC
ACCGGATTGTATTACATAACCGTTTAGGTGAAATCGCACAGCAATATTTGCGCAAAGGTTCAAAAGTCTATATTGAGGGT
TCATTGCGTACCCGCCAGTGGACAGATCAAAATGGTCAGGAGCGTTACACTACGGAAATTCGTGGTGAACAAATGCAGAT
GCTGGACTCAAACCGCCCACAAGGCGAGCAGGGTATGGGTGGTGATACAGGCTTTAATCAGCCTCGTTTTAATAATAACC
CGCAAGGCGGCTATGGCCAGCAAAATAATAACGCGAACCAGCCGAACCCGTCATATGGCCAAAACACCGGTTATGGCAAT
AACAACCCAGGTGGTTTCGCGCCGAAGGCTCCTCAAGCTGCGCCAACGCCTGCACCTGCCGATTTAGATGATGATCTTCC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.105

100

0.527
  ssb Vibrio cholerae strain A1552

46.667

100

0.484
  ssb Neisseria gonorrhoeae MS11

41.361

100

0.42
  ssb Neisseria meningitidis MC58

40.838

100

0.415