Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PGW97_RS14790 Genome accession   NZ_CP117517
Coordinates   3252185..3252733 (-) Length   182 a.a.
NCBI ID   WP_207103448.1    Uniprot ID   -
Organism   Photobacterium sp. GSS17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3247185..3257733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS14775 csrD 3247315..3249258 (-) 1944 WP_217391848.1 RNase E specificity factor CsrD -
  PGW97_RS14780 - 3249619..3250503 (+) 885 WP_047887022.1 LysR family transcriptional regulator -
  PGW97_RS14785 - 3250841..3252040 (+) 1200 WP_273857580.1 putative manganese transporter -
  PGW97_RS14790 ssb 3252185..3252733 (-) 549 WP_207103448.1 single-stranded DNA-binding protein Machinery gene
  PGW97_RS14795 uvrA 3253002..3255845 (+) 2844 WP_273857581.1 excinuclease ABC subunit UvrA -
  PGW97_RS14800 - 3255933..3257702 (+) 1770 WP_273857582.1 Wzy polymerase domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20009.15 Da        Isoelectric Point: 4.9269

>NTDB_id=786190 PGW97_RS14790 WP_207103448.1 3252185..3252733(-) (ssb) [Photobacterium sp. GSS17]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKNTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRFSTEIVVQGYNGIMQMLGGRQGGQGMGAPMGGQQQQGGWGQPQQPAAAPQQQSYAPQQQSAPQ
QQPASQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=786190 PGW97_RS14790 WP_207103448.1 3252185..3252733(-) (ssb) [Photobacterium sp. GSS17]
ATGGCCAGTCGTGGCGTAAACAAGGTTATCCTGGTTGGTAACTTGGGTAATGATCCGGAAATCCGTTACATGCCGAGTGG
TGGTGCAGTTGCAAATATTACCGTTGCCACCTCTGAGACTTGGCGTGACAAAAACACCGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTAGTGCTGTTCGGTAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGCAAAGGTTCGCAAGTTTACATT
GAAGGTCAGCTGCAAACGCGTAAATGGCAAGACCAGAGCGGCCAGGATCGCTTCTCGACTGAAATCGTCGTGCAGGGTTA
CAACGGCATTATGCAAATGCTGGGTGGCCGTCAGGGTGGCCAGGGTATGGGCGCCCCTATGGGTGGTCAGCAGCAGCAAG
GTGGTTGGGGACAGCCGCAGCAGCCAGCTGCCGCACCACAGCAGCAGAGCTACGCGCCTCAGCAACAGTCTGCCCCACAA
CAGCAGCCTGCGTCTCAGCCTCAGTACAATGAGCCGCCAATGGATTTCGATGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.435

100

0.813
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.577
  ssb Neisseria gonorrhoeae MS11

49.727

100

0.5
  ssb Neisseria meningitidis MC58

49.18

100

0.495