Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PGW97_RS10410 Genome accession   NZ_CP117517
Coordinates   2334470..2335057 (-) Length   195 a.a.
NCBI ID   WP_047883411.1    Uniprot ID   A0A0J1HIK9
Organism   Photobacterium sp. GSS17     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2329470..2340057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS10390 - 2330842..2331342 (+) 501 WP_047883415.1 response regulator -
  PGW97_RS10395 - 2331469..2332458 (+) 990 WP_273857274.1 2-hydroxyacid dehydrogenase -
  PGW97_RS10400 - 2332696..2333244 (+) 549 WP_047883413.1 hypothetical protein -
  PGW97_RS10405 dsdC 2333471..2334373 (-) 903 WP_217392760.1 DNA-binding transcriptional regulator DsdC -
  PGW97_RS10410 tfoX 2334470..2335057 (-) 588 WP_047883411.1 TfoX/Sxy family DNA transformation protein Regulator
  PGW97_RS10415 - 2335407..2335928 (+) 522 WP_273857276.1 LON peptidase substrate-binding domain-containing protein -
  PGW97_RS10420 - 2336035..2336958 (+) 924 WP_047883409.1 HDOD domain-containing protein -
  PGW97_RS10425 - 2337179..2338078 (+) 900 WP_047883408.1 lysine exporter LysO family protein -
  PGW97_RS10430 ptsG 2338555..2339985 (-) 1431 WP_047883407.1 PTS glucose transporter subunit IIBC -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22460.97 Da        Isoelectric Point: 9.3018

>NTDB_id=786178 PGW97_RS10410 WP_047883411.1 2334470..2335057(-) (tfoX) [Photobacterium sp. GSS17]
MQDFKEELFNYLHEFGGFEKRSMFGGTGVFINGAMYAIITDRALYLRGGEQLDSQLMAQGCERFRHVKRSTTAVVNYYNV
TDVYLQDKIRCSELIRHSIDVAVSEKVYKLSDQSKRLRDLPNMRLTLERMVKKAGIPDVSSFVALGAVEVFRKVRQSQGK
DLDLKLLWMFAGAIDGCHWTLLKDDHKKQLLRSIE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=786178 PGW97_RS10410 WP_047883411.1 2334470..2335057(-) (tfoX) [Photobacterium sp. GSS17]
GTGCAGGATTTTAAGGAAGAGTTATTTAATTATCTTCACGAATTTGGTGGTTTCGAGAAGCGTTCAATGTTCGGTGGTAC
AGGTGTTTTTATCAACGGTGCCATGTATGCCATCATCACAGATCGCGCTCTTTACCTTCGTGGTGGTGAACAGCTCGATT
CTCAATTAATGGCACAGGGGTGTGAAAGGTTCCGACACGTCAAGCGCAGCACTACCGCTGTAGTGAACTATTACAATGTG
ACGGATGTGTACCTGCAAGACAAAATCCGCTGTTCTGAGCTGATTCGACACTCAATTGATGTTGCTGTATCAGAGAAGGT
GTATAAGTTATCGGATCAGAGTAAGCGCTTGAGAGATTTACCAAATATGCGCCTGACGCTGGAACGGATGGTAAAAAAGG
CCGGGATTCCGGATGTCAGCAGCTTCGTGGCGCTGGGGGCGGTAGAGGTGTTTCGTAAGGTACGTCAGAGCCAGGGGAAA
GACCTGGATCTGAAGCTGCTCTGGATGTTTGCTGGTGCTATCGACGGTTGTCACTGGACCTTATTGAAAGACGACCATAA
GAAGCAGTTATTACGCAGTATTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1HIK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

53.403

97.949

0.523
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

53.403

97.949

0.523
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

53.403

97.949

0.523
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

53.403

97.949

0.523
  tfoX Vibrio cholerae strain A1552

53.403

97.949

0.523
  tfoX Vibrio parahaemolyticus RIMD 2210633

53.684

97.436

0.523
  tfoX Vibrio campbellii strain DS40M4

53.158

97.436

0.518
  tfoX Aliivibrio fischeri ES114

48.454

99.487

0.482