Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAP04_RS05270 Genome accession   NZ_CP130623
Coordinates   1109599..1110609 (+) Length   336 a.a.
NCBI ID   WP_180504637.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1104599..1115609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS05245 (QAP04_05230) - 1104786..1106108 (-) 1323 WP_373961027.1 M23 family peptidase -
  QAP04_RS05250 (QAP04_05235) - 1106118..1107062 (-) 945 WP_373961028.1 outer membrane beta-barrel protein -
  QAP04_RS05255 (QAP04_05240) - 1107071..1107925 (-) 855 WP_373961029.1 outer membrane beta-barrel protein -
  QAP04_RS05260 (QAP04_05245) - 1107915..1108637 (-) 723 WP_373961030.1 hypothetical protein -
  QAP04_RS05265 (QAP04_05250) panB 1108786..1109598 (+) 813 WP_373961031.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QAP04_RS05270 (QAP04_05255) ruvB 1109599..1110609 (+) 1011 WP_180504637.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAP04_RS05275 (QAP04_05260) tatB 1110677..1111159 (+) 483 WP_373961032.1 Sec-independent protein translocase protein TatB -
  QAP04_RS05280 (QAP04_05265) tatC 1111152..1111913 (+) 762 WP_373961033.1 twin-arginine translocase subunit TatC -
  QAP04_RS05285 (QAP04_05270) queA 1111914..1112951 (+) 1038 WP_373961034.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAP04_RS05290 (QAP04_05275) rsmG 1112948..1113484 (+) 537 WP_373961035.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QAP04_RS05295 (QAP04_05280) - 1113478..1113708 (+) 231 WP_000944410.1 PP0621 family protein -
  QAP04_RS05300 (QAP04_05285) - 1113711..1114118 (+) 408 WP_340215388.1 hypothetical protein -
  QAP04_RS05310 (QAP04_05295) - 1114250..1114822 (-) 573 WP_373961808.1 outer membrane protein -
  QAP04_RS05315 (QAP04_05300) - 1115143..1115517 (+) 375 WP_000772151.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37355.36 Da        Isoelectric Point: 6.3673

>NTDB_id=786019 QAP04_RS05270 WP_180504637.1 1109599..1110609(+) (ruvB) [Helicobacter pylori strain BS04]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEYVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=786019 QAP04_RS05270 WP_180504637.1 1109599..1110609(+) (ruvB) [Helicobacter pylori strain BS04]
ATGAAAGAACGGATAGTTAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATTATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACTAATTTACAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAATATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.321

100

0.973
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482