Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PRL19_RS11425 Genome accession   NZ_CP117466
Coordinates   2317066..2317578 (-) Length   170 a.a.
NCBI ID   WP_127898262.1    Uniprot ID   -
Organism   Paracoccus marcusii strain MBLB0836     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2312066..2322578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRL19_RS11400 (PRL19_11400) - 2312317..2313777 (-) 1461 WP_273743047.1 hypothetical protein -
  PRL19_RS11405 (PRL19_11405) - 2313770..2313934 (-) 165 WP_273743048.1 hypothetical protein -
  PRL19_RS11410 (PRL19_11410) - 2314061..2314612 (+) 552 WP_240542382.1 shikimate kinase -
  PRL19_RS11415 (PRL19_11415) aroB 2314609..2315715 (+) 1107 WP_273743049.1 3-dehydroquinate synthase -
  PRL19_RS11420 (PRL19_11420) - 2315792..2316838 (-) 1047 WP_273743050.1 Leu/Phe/Val dehydrogenase -
  PRL19_RS11425 (PRL19_11425) ssb 2317066..2317578 (-) 513 WP_127898262.1 single-stranded DNA-binding protein Machinery gene
  PRL19_RS11430 (PRL19_11430) - 2317752..2318372 (+) 621 WP_273743051.1 lytic transglycosylase domain-containing protein -
  PRL19_RS11435 (PRL19_11435) - 2318376..2318897 (-) 522 WP_273743052.1 lytic transglycosylase domain-containing protein -
  PRL19_RS11440 (PRL19_11440) lpdA 2318890..2320278 (-) 1389 WP_252930712.1 dihydrolipoyl dehydrogenase -
  PRL19_RS11445 (PRL19_11445) - 2320341..2320742 (-) 402 WP_273743053.1 MAPEG family protein -
  PRL19_RS11450 (PRL19_11450) - 2320742..2320996 (-) 255 WP_273743054.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17825.52 Da        Isoelectric Point: 5.9567

>NTDB_id=785852 PRL19_RS11425 WP_127898262.1 2317066..2317578(-) (ssb) [Paracoccus marcusii strain MBLB0836]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSENWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYSTEIVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGRDSGGYDDYNQGGGSSSRGGGGGQGGG
RADYDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=785852 PRL19_RS11425 WP_127898262.1 2317066..2317578(-) (ssb) [Paracoccus marcusii strain MBLB0836]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCACCACCGGAGAACGCAAGGAGCGCACCGAGT
GGCACACCGTCGCCATCTTCAACGAGGGCCTGGTGGGCGTCGTCGAACGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGCTACTCGACCGAGATCGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGCGGTGGCGGCGGCATGGGTGGTGGCGGCATGGGCGGCGGTGGTC
GCGACAGCGGCGGCTATGACGACTATAACCAGGGCGGCGGATCGTCGTCGCGCGGCGGCGGCGGCGGCCAGGGCGGCGGA
CGCGCCGATTACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.535
  ssb Vibrio cholerae strain A1552

49.711

100

0.506
  ssb Neisseria meningitidis MC58

36.464

100

0.388
  ssb Neisseria gonorrhoeae MS11

36.464

100

0.388