Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH68_RS24830 Genome accession   NZ_CP117464
Coordinates   5445039..5445554 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas lurida strain FP1465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5440039..5450554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH68_RS24805 (PSH68_24795) - 5440281..5441390 (-) 1110 WP_098467446.1 DUF3182 family protein -
  PSH68_RS24810 (PSH68_24800) - 5441562..5442521 (-) 960 WP_098467447.1 GlxA family transcriptional regulator -
  PSH68_RS24815 (PSH68_24805) - 5442618..5443181 (+) 564 WP_034109548.1 cysteine hydrolase family protein -
  PSH68_RS24820 (PSH68_24810) tam 5443203..5443964 (-) 762 WP_122712410.1 trans-aconitate 2-methyltransferase -
  PSH68_RS24825 (PSH68_24815) - 5444065..5444985 (+) 921 WP_034109551.1 LysR family transcriptional regulator -
  PSH68_RS24830 (PSH68_24820) ssb 5445039..5445554 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  PSH68_RS24835 (PSH68_24825) - 5445564..5446958 (-) 1395 WP_034109553.1 MFS transporter -
  PSH68_RS24840 (PSH68_24830) uvrA 5447137..5449971 (+) 2835 WP_069078326.1 excinuclease ABC subunit UvrA -
  PSH68_RS24845 (PSH68_24835) bfr 5450037..5450501 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=785812 PSH68_RS24830 WP_003232445.1 5445039..5445554(-) (ssb) [Pseudomonas lurida strain FP1465]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=785812 PSH68_RS24830 WP_003232445.1 5445039..5445554(-) (ssb) [Pseudomonas lurida strain FP1465]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCCCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474