Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH69_RS26645 Genome accession   NZ_CP117461
Coordinates   5924545..5925063 (-) Length   172 a.a.
NCBI ID   WP_064620707.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5919545..5930063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS26625 (PSH69_26615) - 5919802..5920230 (+) 429 WP_018925663.1 DUF350 domain-containing protein -
  PSH69_RS26630 (PSH69_26620) - 5920250..5920978 (+) 729 WP_018925662.1 DUF1190 domain-containing protein -
  PSH69_RS26635 (PSH69_26625) - 5920991..5922148 (+) 1158 WP_305410287.1 glutathionylspermidine synthase family protein -
  PSH69_RS26640 (PSH69_26630) - 5922269..5924473 (+) 2205 WP_305410288.1 OsmC domain/YcaO domain-containing protein -
  PSH69_RS26645 (PSH69_26635) ssb 5924545..5925063 (-) 519 WP_064620707.1 single-stranded DNA-binding protein Machinery gene
  PSH69_RS26650 (PSH69_26640) - 5925073..5926470 (-) 1398 WP_305410289.1 MFS transporter -
  PSH69_RS26655 (PSH69_26645) uvrA 5926662..5929496 (+) 2835 WP_018925658.1 excinuclease ABC subunit UvrA -
  PSH69_RS26660 (PSH69_26650) bfr 5929569..5930033 (-) 465 WP_018925657.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19083.24 Da        Isoelectric Point: 5.9314

>NTDB_id=785737 PSH69_RS26645 WP_064620707.1 5924545..5925063(-) (ssb) [Pseudomonas sp. FP1740]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGNNYQQSAPAPRQQAPRPQQSAPQQSRPAPPQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=785737 PSH69_RS26645 WP_064620707.1 5924545..5925063(-) (ssb) [Pseudomonas sp. FP1740]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAAGTGGCTGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTATATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGAATAACTACCAGCAATCCGCTCCAGCCCCAC
GCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGCCCGGCTCCACCGCAGGCTGCTCCGCAACCGGCT
CCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.605
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.517
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.5
  ssb Neisseria meningitidis MC58

47.727

100

0.488