Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH64_RS26935 Genome accession   NZ_CP117460
Coordinates   5935963..5936484 (-) Length   173 a.a.
NCBI ID   WP_007933689.1    Uniprot ID   A0A291ABB2
Organism   Pseudomonas sp. FP1742     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5930963..5941484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH64_RS26915 (PSH64_26910) - 5931219..5931647 (+) 429 WP_007933682.1 DUF350 domain-containing protein -
  PSH64_RS26920 (PSH64_26915) - 5931667..5932395 (+) 729 WP_105343451.1 DUF1190 domain-containing protein -
  PSH64_RS26925 (PSH64_26920) - 5932408..5933565 (+) 1158 WP_305479205.1 glutathionylspermidine synthase family protein -
  PSH64_RS26930 (PSH64_26925) - 5933687..5935891 (+) 2205 WP_305479206.1 OsmC domain/YcaO domain-containing protein -
  PSH64_RS26935 (PSH64_26930) ssb 5935963..5936484 (-) 522 WP_007933689.1 single-stranded DNA-binding protein Machinery gene
  PSH64_RS26940 (PSH64_26935) - 5936494..5937891 (-) 1398 WP_018925659.1 MFS transporter -
  PSH64_RS26945 (PSH64_26940) uvrA 5938083..5940917 (+) 2835 WP_105343445.1 excinuclease ABC subunit UvrA -
  PSH64_RS26950 (PSH64_26945) bfr 5940991..5941455 (-) 465 WP_019581411.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19140.30 Da        Isoelectric Point: 5.9314

>NTDB_id=785707 PSH64_RS26935 WP_007933689.1 5935963..5936484(-) (ssb) [Pseudomonas sp. FP1742]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRPAPPQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=785707 PSH64_RS26935 WP_007933689.1 5935963..5936484(-) (ssb) [Pseudomonas sp. FP1742]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAATCCGCCCCAGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCTCCGCAACAGTCGCGCCCGGCTCCACCGCAGGCCGCTCCTCAGCCG
GCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291ABB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.459

100

0.601
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.514
  ssb Neisseria meningitidis MC58

47.778

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.497