Detailed information NTG0785652

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH90_RS22590
• Genome accession: NZ_CP117458
• Coordinates: 5067708..5069054 (+)
• Length: 448 a.a.
• NCBI ID: WP_305381550.1
• Uniprot ID: A0AAQ3J2P5
• Organism: Pseudomonas sp. FP1762
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5062708..5074054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH90_RS22565 (PSH90_22555)	pgeF	5062922..5063644 (-)	723	WP_056790460.1	peptidoglycan editing factor PgeF	-
PSH90_RS22570 (PSH90_22560)	rluD	5063641..5064603 (-)	963	WP_016773140.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH90_RS22575 (PSH90_22565)	-	5064755..5065771 (+)	1017	WP_041477809.1	outer membrane protein assembly factor BamD	-
PSH90_RS22580 (PSH90_22570)	-	5065899..5066132 (+)	234	WP_056790465.1	PP0621 family protein	-
PSH90_RS22585 (PSH90_22575)	pilS	5066122..5067711 (+)	1590	WP_305381549.1	PAS domain-containing sensor histidine kinase	Regulator
PSH90_RS22590 (PSH90_22580)	pilR	5067708..5069054 (+)	1347	WP_305381550.1	sigma-54 dependent transcriptional regulator	Regulator
PSH90_RS22595 (PSH90_22585)	thiO	5069147..5070247 (-)	1101	WP_252878916.1	glycine oxidase ThiO	-
PSH90_RS22600 (PSH90_22590)	-	5070305..5070706 (-)	402	WP_256811028.1	type IV pilin protein	-
PSH90_RS22605 (PSH90_22595)	-	5070722..5073811 (-)	3090	WP_305381551.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50153.45 Da
• Isoelectric Point: 6.2623

>NTDB_id=785652 PSH90_RS22590 WP_305381550.1 5067708..5069054(+) (pilR) [Pseudomonas sp. FP1762]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPNLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=785652 PSH90_RS22590 WP_305381550.1 5067708..5069054(+) (pilR) [Pseudomonas sp. FP1762]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCAAACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGCCTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATCTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCAATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCTTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTACTCAAGCGCTTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGATGGGGCGATGGCCGATCTGACACAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGAGGAAACTGATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCAGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGCTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.33	98.884	0.775
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507
luxO	Vibrio cholerae strain A1552	39.853	91.295	0.364