Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH90_RS22585 Genome accession   NZ_CP117458
Coordinates   5066122..5067711 (+) Length   529 a.a.
NCBI ID   WP_305381549.1    Uniprot ID   A0AAQ3J5H1
Organism   Pseudomonas sp. FP1762     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5061122..5072711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH90_RS22565 (PSH90_22555) pgeF 5062922..5063644 (-) 723 WP_056790460.1 peptidoglycan editing factor PgeF -
  PSH90_RS22570 (PSH90_22560) rluD 5063641..5064603 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH90_RS22575 (PSH90_22565) - 5064755..5065771 (+) 1017 WP_041477809.1 outer membrane protein assembly factor BamD -
  PSH90_RS22580 (PSH90_22570) - 5065899..5066132 (+) 234 WP_056790465.1 PP0621 family protein -
  PSH90_RS22585 (PSH90_22575) pilS 5066122..5067711 (+) 1590 WP_305381549.1 PAS domain-containing sensor histidine kinase Regulator
  PSH90_RS22590 (PSH90_22580) pilR 5067708..5069054 (+) 1347 WP_305381550.1 sigma-54 dependent transcriptional regulator Regulator
  PSH90_RS22595 (PSH90_22585) thiO 5069147..5070247 (-) 1101 WP_252878916.1 glycine oxidase ThiO -
  PSH90_RS22600 (PSH90_22590) - 5070305..5070706 (-) 402 WP_256811028.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58612.28 Da        Isoelectric Point: 6.8632

>NTDB_id=785651 PSH90_RS22585 WP_305381549.1 5066122..5067711(+) (pilS) [Pseudomonas sp. FP1762]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQATER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785651 PSH90_RS22585 WP_305381549.1 5066122..5067711(+) (pilS) [Pseudomonas sp. FP1762]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTCTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTACCTGATCATCAATATGCTGTTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGTTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCACTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGCGAGAACCTGGCCGAACAACG
CGCCAGCGAGGTGGTCAGCCTGGAGGCGTTGAATGCGTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTACTCGACG
AACAACGCCGGGTACAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTCGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCACCGAACGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACACTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAACTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACGAGCAGTCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595