Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH71_RS25775 | Genome accession | NZ_CP117457 |
| Coordinates | 5788366..5789235 (+) | Length | 289 a.a. |
| NCBI ID | WP_305441614.1 | Uniprot ID | - |
| Organism | Pseudomonas brassicacearum strain FP1843 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5783366..5794235
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH71_RS25750 (PSH71_25745) | - | 5783543..5783839 (+) | 297 | WP_013694228.1 | DUF2845 domain-containing protein | - |
| PSH71_RS25755 (PSH71_25750) | - | 5784168..5784521 (-) | 354 | WP_003205664.1 | BON domain-containing protein | - |
| PSH71_RS25760 (PSH71_25755) | pilA | 5784794..5785219 (-) | 426 | WP_013694230.1 | pilin | Machinery gene |
| PSH71_RS25765 (PSH71_25760) | pilB | 5785444..5787144 (+) | 1701 | WP_003205669.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH71_RS25770 (PSH71_25765) | pilC | 5787147..5788364 (+) | 1218 | WP_003205670.1 | type II secretion system F family protein | Machinery gene |
| PSH71_RS25775 (PSH71_25770) | pilD | 5788366..5789235 (+) | 870 | WP_305441614.1 | A24 family peptidase | Machinery gene |
| PSH71_RS25780 (PSH71_25775) | coaE | 5789235..5789858 (+) | 624 | WP_003205673.1 | dephospho-CoA kinase | - |
| PSH71_RS25785 (PSH71_25780) | yacG | 5789855..5790061 (+) | 207 | WP_003205675.1 | DNA gyrase inhibitor YacG | - |
| PSH71_RS25790 (PSH71_25785) | - | 5790072..5790287 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| PSH71_RS25795 (PSH71_25790) | - | 5790351..5791037 (-) | 687 | WP_003205678.1 | energy-coupling factor ABC transporter permease | - |
| PSH71_RS25800 (PSH71_25795) | - | 5791079..5791489 (-) | 411 | WP_003205679.1 | tautomerase family protein | - |
| PSH71_RS25805 (PSH71_25800) | - | 5791641..5792534 (+) | 894 | WP_003205681.1 | LysR substrate-binding domain-containing protein | - |
| PSH71_RS25810 (PSH71_25805) | - | 5793080..5793706 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| PSH71_RS25815 (PSH71_25810) | - | 5793703..5794230 (+) | 528 | WP_003205684.1 | MOSC domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31857.00 Da Isoelectric Point: 8.3485
>NTDB_id=785621 PSH71_RS25775 WP_305441614.1 5788366..5789235(+) (pilD) [Pseudomonas brassicacearum strain FP1843]
MPLSEFFVLYPLAFALVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYRQSVGF
MPLSEFFVLYPLAFALVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYRQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=785621 PSH71_RS25775 WP_305441614.1 5788366..5789235(+) (pilD) [Pseudomonas brassicacearum strain FP1843]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGCGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCTGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATAGGCAGTCTGTCGGTTTTTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGCGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCTGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATAGGCAGTCTGTCGGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.381 |
97.232 |
0.519 |
| pilD | Vibrio campbellii strain DS40M4 |
50.877 |
98.616 |
0.502 |
| pilD | Acinetobacter baumannii D1279779 |
48.754 |
97.232 |
0.474 |
| pilD | Acinetobacter nosocomialis M2 |
48.754 |
97.232 |
0.474 |
| pilD | Neisseria gonorrhoeae MS11 |
49.259 |
93.426 |
0.46 |