Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH60_RS25585 Genome accession   NZ_CP117456
Coordinates   5590310..5590825 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas simiae strain FP1885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5585310..5595825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH60_RS25560 (PSH60_25555) - 5585417..5586526 (-) 1110 WP_137206170.1 DUF3182 family protein -
  PSH60_RS25565 (PSH60_25560) - 5586698..5587657 (-) 960 WP_137206169.1 GlxA family transcriptional regulator -
  PSH60_RS25570 (PSH60_25565) - 5587755..5588318 (+) 564 WP_042570818.1 cysteine hydrolase family protein -
  PSH60_RS25575 (PSH60_25570) tam 5588340..5589101 (-) 762 WP_042570817.1 trans-aconitate 2-methyltransferase -
  PSH60_RS25580 (PSH60_25575) - 5589284..5590219 (+) 936 WP_021492992.1 hypothetical protein -
  PSH60_RS25585 (PSH60_25580) ssb 5590310..5590825 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  PSH60_RS25590 (PSH60_25585) - 5590835..5592229 (-) 1395 WP_010206876.1 MFS transporter -
  PSH60_RS25595 (PSH60_25590) uvrA 5592408..5595242 (+) 2835 WP_010206877.1 excinuclease ABC subunit UvrA -
  PSH60_RS25600 (PSH60_25595) bfr 5595309..5595773 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=785595 PSH60_RS25585 WP_003232445.1 5590310..5590825(-) (ssb) [Pseudomonas simiae strain FP1885]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=785595 PSH60_RS25585 WP_003232445.1 5590310..5590825(-) (ssb) [Pseudomonas simiae strain FP1885]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACTGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAAGGCCAAGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCTGCCCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474