Detailed information NTG0785512

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH72_RS24415
• Genome accession: NZ_CP117453
• Coordinates: 5404463..5405335 (+)
• Length: 290 a.a.
• NCBI ID: WP_305503318.1
• Uniprot ID: -
• Organism: Pseudomonas cucumis strain FP1962
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5399463..5410335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH72_RS24390 (PSH72_24385)	-	5399743..5400039 (+)	297	WP_305449860.1	DUF2845 domain-containing protein	-
PSH72_RS24395 (PSH72_24390)	-	5400219..5400575 (-)	357	WP_305503315.1	BON domain-containing protein	-
PSH72_RS24400 (PSH72_24395)	pilA/pilAI	5400892..5401314 (-)	423	WP_305446926.1	pilin	Machinery gene
PSH72_RS24405 (PSH72_24400)	pilB	5401541..5403241 (+)	1701	WP_305446927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH72_RS24410 (PSH72_24405)	pilC	5403244..5404461 (+)	1218	WP_305503317.1	type II secretion system F family protein	Machinery gene
PSH72_RS24415 (PSH72_24410)	pilD	5404463..5405335 (+)	873	WP_305503318.1	A24 family peptidase	Machinery gene
PSH72_RS24420 (PSH72_24415)	coaE	5405332..5405955 (+)	624	WP_305425147.1	dephospho-CoA kinase	-
PSH72_RS24425 (PSH72_24420)	yacG	5405952..5406152 (+)	201	WP_030130376.1	DNA gyrase inhibitor YacG	-
PSH72_RS24430 (PSH72_24425)	-	5406162..5406377 (-)	216	WP_007938959.1	hypothetical protein	-
PSH72_RS24435 (PSH72_24430)	-	5406441..5407130 (-)	690	WP_305503320.1	energy-coupling factor ABC transporter permease	-
PSH72_RS24440 (PSH72_24435)	-	5407377..5408831 (+)	1455	WP_305503322.1	TrkH family potassium uptake protein	-
PSH72_RS24445 (PSH72_24440)	dctP	5408936..5409931 (+)	996	WP_305503324.1	C4-dicarboxylate TRAP substrate-binding protein DctP	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32155.34 Da
• Isoelectric Point: 7.3244

>NTDB_id=785512 PSH72_RS24415 WP_305503318.1 5404463..5405335(+) (pilD) [Pseudomonas cucumis strain FP1962]
MSLNEFLSLNPLAFTITALVIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPPEAPGPAYNLILPHSECPDCAHRIR
AWENIPVLSYLFLRGRCSNCATPISKRYPLTELACGLLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHDALWGAVAGYMALWTVFWLFKLITGKDGIGYGDFKLLAMLGAWGGWQVLPLTILLSSLLG
AIIGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=785512 PSH72_RS24415 WP_305503318.1 5404463..5405335(+) (pilD) [Pseudomonas cucumis strain FP1962]
ATGTCCTTGAACGAATTTCTGAGTCTCAACCCGCTGGCCTTCACGATCACCGCATTGGTGATCGGTTTGCTGATCGGCAG
TTTTCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCTTGCAAGCCCATGACGTCCTGGACT
TGCCACCCGAAGCCCCCGGCCCGGCTTACAACCTGATACTGCCTCACTCCGAGTGCCCCGACTGTGCCCATCGGATTCGA
GCGTGGGAAAACATTCCCGTGCTCAGTTATCTGTTTTTACGTGGGCGATGCTCGAACTGCGCGACGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCGTTCGTCGCCTGGCACTTCGGCTTCGGTTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGACGCCGAACACCAGCTGTTGCCGGACGTGCTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGGCTCTTCGTCTCGCTACATGACGCGCTCTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGTTGTTCAAGTTGATCACCGGCAAGGACGGCATCGGCTACGGCGACT
TCAAGCTCTTGGCGATGCTCGGCGCCTGGGGCGGTTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCATCGCTGCTGGGC
GCCATCATCGGGGTGATTTTGCTGCGCCTGCGGGACGCAAAAACCTCGACGCCGCTGCCCTTTGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.228	98.276	0.503
pilD	Acinetobacter baumannii D1279779	51.264	95.517	0.49
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter nosocomialis M2	50.542	95.517	0.483
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448