Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH78_RS03240 Genome accession   NZ_CP117452
Coordinates   680294..680809 (+) Length   171 a.a.
NCBI ID   WP_024778338.1    Uniprot ID   A0A0B1YWX5
Organism   Pseudomonas sp. FP198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 675294..685809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS03225 (PSH78_03225) bfr 675349..675813 (+) 465 WP_024778335.1 bacterioferritin -
  PSH78_RS03230 (PSH78_03230) uvrA 675884..678718 (-) 2835 WP_305498448.1 excinuclease ABC subunit UvrA -
  PSH78_RS03235 (PSH78_03235) - 678887..680284 (+) 1398 WP_305498449.1 MFS transporter -
  PSH78_RS03240 (PSH78_03240) ssb 680294..680809 (+) 516 WP_024778338.1 single-stranded DNA-binding protein Machinery gene
  PSH78_RS03245 (PSH78_03245) - 680929..681423 (-) 495 WP_305498451.1 hypothetical protein -
  PSH78_RS03250 (PSH78_03250) - 681638..682195 (-) 558 WP_305498453.1 cysteine hydrolase family protein -
  PSH78_RS03255 (PSH78_03255) - 682327..684720 (-) 2394 WP_305501170.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19113.27 Da        Isoelectric Point: 5.9455

>NTDB_id=785471 PSH78_RS03240 WP_024778338.1 680294..680809(+) (ssb) [Pseudomonas sp. FP198]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQSAPQPQRERPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=785471 PSH78_RS03240 WP_024778338.1 680294..680809(+) (ssb) [Pseudomonas sp. FP198]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCAGAAGTTCGCTACCTGCCTAACGGCAA
CGCCGTGACCAACCTGAGCCTGGCGACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCTGAGATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTCGGTGGCCGTCCGCAAGGCGACCAGCAGCAGGGTGGCAACAACTACCAGCAGTCGGCTCCACGCCAGC
AAGCGCCTCGTCCGCAATCGGCGCCACAGCCACAGCGCGAGCGCCCGGCTCCGCAACAGGCCGCACCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YWX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.602
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.515
  ssb Neisseria meningitidis MC58

47.486

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.491