Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH92_RS25410 Genome accession   NZ_CP117451
Coordinates   5787667..5788188 (-) Length   173 a.a.
NCBI ID   WP_122566150.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5782667..5793188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH92_RS25400 (PSH92_25395) - 5784873..5786189 (-) 1317 WP_122566152.1 MFS transporter -
  PSH92_RS25405 (PSH92_25400) - 5786399..5787466 (+) 1068 WP_305468655.1 LacI family DNA-binding transcriptional regulator -
  PSH92_RS25410 (PSH92_25405) ssb 5787667..5788188 (-) 522 WP_122566150.1 single-stranded DNA-binding protein Machinery gene
  PSH92_RS25415 (PSH92_25410) - 5788198..5789595 (-) 1398 WP_122566149.1 MFS transporter -
  PSH92_RS25420 (PSH92_25415) uvrA 5789775..5792609 (+) 2835 WP_305468656.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19312.48 Da        Isoelectric Point: 5.9455

>NTDB_id=785456 PSH92_RS25410 WP_122566150.1 5787667..5788188(-) (ssb) [Pseudomonas beijingensis strain FP2034]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQQSAPQPQRERPAAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=785456 PSH92_RS25410 WP_122566150.1 5787667..5788188(-) (ssb) [Pseudomonas beijingensis strain FP2034]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCCGAGATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGTGGCCGTCCTCAGGGCGACCAGCAGCAAGGTGGCAACAACTACCAGCAGTCGGCCCCGCGTCAGC
AGGCTCCTCGTCCGCAGCAGTCGGCCCCACAGCCACAGCGCGAGCGCCCGGCGGCTCCACAGCAGGCCGCGCCGCAGCCG
GCTCCGGATTTTGACAGCTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.607
  ssb Glaesserella parasuis strain SC1401

47.802

100

0.503
  ssb Neisseria meningitidis MC58

48.333

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.503