Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH92_RS24145 | Genome accession | NZ_CP117451 |
| Coordinates | 5512230..5513099 (+) | Length | 289 a.a. |
| NCBI ID | WP_305468535.1 | Uniprot ID | - |
| Organism | Pseudomonas beijingensis strain FP2034 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5507230..5518099
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH92_RS24120 (PSH92_24115) | - | 5507378..5507674 (+) | 297 | WP_305468531.1 | DUF2845 domain-containing protein | - |
| PSH92_RS24125 (PSH92_24120) | - | 5508055..5508408 (-) | 354 | WP_025215523.1 | BON domain-containing protein | - |
| PSH92_RS24130 (PSH92_24125) | pilA | 5508676..5509083 (-) | 408 | WP_122564964.1 | pilin | Machinery gene |
| PSH92_RS24135 (PSH92_24130) | pilB | 5509308..5511008 (+) | 1701 | WP_122564916.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH92_RS24140 (PSH92_24135) | pilC | 5511011..5512228 (+) | 1218 | WP_122564917.1 | type II secretion system F family protein | Machinery gene |
| PSH92_RS24145 (PSH92_24140) | pilD | 5512230..5513099 (+) | 870 | WP_305468535.1 | A24 family peptidase | Machinery gene |
| PSH92_RS24150 (PSH92_24145) | coaE | 5513112..5513735 (+) | 624 | WP_122564919.1 | dephospho-CoA kinase | - |
| PSH92_RS24155 (PSH92_24150) | yacG | 5513732..5513938 (+) | 207 | WP_018609255.1 | DNA gyrase inhibitor YacG | - |
| PSH92_RS24160 (PSH92_24155) | - | 5513935..5514150 (-) | 216 | WP_053125334.1 | hypothetical protein | - |
| PSH92_RS24165 (PSH92_24160) | - | 5514214..5514900 (-) | 687 | WP_305468537.1 | energy-coupling factor ABC transporter permease | - |
| PSH92_RS24170 (PSH92_24165) | - | 5515060..5515686 (+) | 627 | WP_025215531.1 | DUF1780 domain-containing protein | - |
| PSH92_RS24175 (PSH92_24170) | - | 5515683..5516210 (+) | 528 | WP_122564921.1 | MOSC domain-containing protein | - |
| PSH92_RS24180 (PSH92_24175) | - | 5516263..5516436 (+) | 174 | WP_076386361.1 | DUF3094 family protein | - |
| PSH92_RS24185 (PSH92_24180) | - | 5516497..5517795 (+) | 1299 | WP_305468539.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31829.97 Da Isoelectric Point: 7.7294
>NTDB_id=785452 PSH92_RS24145 WP_305468535.1 5512230..5513099(+) (pilD) [Pseudomonas beijingensis strain FP2034]
MPLSEFFVLYPVAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHELLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVLVLTWGLLGMSLIDSEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPVAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHELLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVLVLTWGLLGMSLIDSEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=785452 PSH92_RS24145 WP_305468535.1 5512230..5513099(+) (pilD) [Pseudomonas beijingensis strain FP2034]
ATGCCCCTGAGCGAATTTTTCGTGCTGTATCCCGTGGCTTTTGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGAGCTGCTAGGCC
TGCCCGCCGAAGCCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTATTGAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGTTGCGCCGCGCCCATCGGCAAGCG
CTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCTGCGA
TGGTGTTGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATTCCGAGCATCAATTGCTGCCCGATACCTTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGAGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCGTGATCGGGGTCATTGTGCTGCGCTTGCGTGACGCTCCCGGGTCGACGCAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTTTTCGTGCTGTATCCCGTGGCTTTTGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGAGCTGCTAGGCC
TGCCCGCCGAAGCCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTATTGAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGTTGCGCCGCGCCCATCGGCAAGCG
CTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCTGCGA
TGGTGTTGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATTCCGAGCATCAATTGCTGCCCGATACCTTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGAGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCGTGATCGGGGTCATTGTGCTGCGCTTGCGTGACGCTCCCGGGTCGACGCAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.616 |
0.498 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |
| pilD | Acinetobacter baumannii D1279779 |
47.687 |
97.232 |
0.464 |
| pilD | Acinetobacter nosocomialis M2 |
47.687 |
97.232 |
0.464 |