Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH76_RS27115 Genome accession   NZ_CP117447
Coordinates   5983948..5984463 (-) Length   171 a.a.
NCBI ID   WP_003194626.1    Uniprot ID   A0AAJ3MRS5
Organism   Pseudomonas sp. FP215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5978948..5989463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH76_RS27090 (PSH76_27080) - 5979325..5980080 (-) 756 WP_043050059.1 S9 family peptidase -
  PSH76_RS27095 (PSH76_27085) - 5980070..5981179 (-) 1110 WP_305493232.1 DUF3182 family protein -
  PSH76_RS27100 (PSH76_27090) - 5981348..5982319 (-) 972 WP_305493233.1 GlxA family transcriptional regulator -
  PSH76_RS27105 (PSH76_27095) - 5982416..5982979 (+) 564 WP_032895077.1 cysteine hydrolase family protein -
  PSH76_RS27110 (PSH76_27100) tam 5983001..5983762 (-) 762 WP_305493234.1 trans-aconitate 2-methyltransferase -
  PSH76_RS27115 (PSH76_27105) ssb 5983948..5984463 (-) 516 WP_003194626.1 single-stranded DNA-binding protein Machinery gene
  PSH76_RS27120 (PSH76_27110) - 5984473..5985867 (-) 1395 WP_034133877.1 MFS transporter -
  PSH76_RS27125 (PSH76_27115) uvrA 5986046..5988880 (+) 2835 WP_138761826.1 excinuclease ABC subunit UvrA -
  PSH76_RS27130 (PSH76_27120) bfr 5988948..5989412 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19112.24 Da        Isoelectric Point: 5.9589

>NTDB_id=785346 PSH76_RS27115 WP_003194626.1 5983948..5984463(-) (ssb) [Pseudomonas sp. FP215]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTNERKEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=785346 PSH76_RS27115 WP_003194626.1 5983948..5984463(-) (ssb) [Pseudomonas sp. FP215]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAATGGACCGATAAGCAGACCAACGAGCGCAAAGAGAAAACCGAGT
GGCACCGCGTGTCGTTGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCGCGTCCGCAGCCAAGCCAACAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCTGCTCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.777

100

0.626
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.52
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.48
  ssb Neisseria meningitidis MC58

44.318

100

0.456