Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH79_RS24620 Genome accession   NZ_CP117445
Coordinates   5495578..5496102 (-) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas sp. FP2196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5490578..5501102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS24590 (PSH79_24585) - 5490877..5491545 (+) 669 WP_305440061.1 YjfI family protein -
  PSH79_RS24595 (PSH79_24590) - 5491563..5492261 (+) 699 WP_305440062.1 PspA/IM30 family protein -
  PSH79_RS24600 (PSH79_24595) - 5492466..5493116 (+) 651 WP_305440064.1 DUF2491 family protein -
  PSH79_RS24605 (PSH79_24600) - 5493132..5493557 (+) 426 WP_305440065.1 DUF350 domain-containing protein -
  PSH79_RS24610 (PSH79_24605) - 5493575..5494279 (+) 705 WP_305440066.1 DUF1190 domain-containing protein -
  PSH79_RS24615 (PSH79_24610) - 5494282..5495439 (+) 1158 WP_305440068.1 glutathionylspermidine synthase family protein -
  PSH79_RS24620 (PSH79_24615) ssb 5495578..5496102 (-) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  PSH79_RS24625 (PSH79_24620) - 5496112..5497509 (-) 1398 WP_305440069.1 MFS transporter -
  PSH79_RS24630 (PSH79_24625) uvrA 5497701..5500535 (+) 2835 WP_305440070.1 excinuclease ABC subunit UvrA -
  PSH79_RS24635 (PSH79_24630) bfr 5500601..5501065 (-) 465 WP_025109504.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=785299 PSH79_RS24620 WP_008081898.1 5495578..5496102(-) (ssb) [Pseudomonas sp. FP2196]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=785299 PSH79_RS24620 WP_008081898.1 5495578..5496102(-) (ssb) [Pseudomonas sp. FP2196]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACAAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGTAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACTCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAGATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAACAGGGCGACCAACAAGGCGGCGGCAACAACTATCAGCAGTCCGCTCCAGCTC
CGCGTCAGCAGGCACCGCGTCCGCAGCAGTCGGCTCCGCAACAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCGCAA
CCGGCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489