Detailed information NTG0785297

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH79_RS23540
• Genome accession: NZ_CP117445
• Coordinates: 5257294..5258634 (+)
• Length: 446 a.a.
• NCBI ID: WP_305439866.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2196
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5252294..5263634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH79_RS23515 (PSH79_23510)	pgeF	5252503..5253225 (-)	723	WP_305439863.1	peptidoglycan editing factor PgeF	-
PSH79_RS23520 (PSH79_23515)	rluD	5253222..5254184 (-)	963	WP_305439864.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH79_RS23525 (PSH79_23520)	-	5254336..5255352 (+)	1017	WP_187679215.1	outer membrane protein assembly factor BamD	-
PSH79_RS23530 (PSH79_23525)	-	5255479..5255712 (+)	234	WP_305439865.1	PP0621 family protein	-
PSH79_RS23535 (PSH79_23530)	pilS	5255702..5257291 (+)	1590	WP_305444071.1	PAS domain-containing sensor histidine kinase	Regulator
PSH79_RS23540 (PSH79_23535)	pilR	5257294..5258634 (+)	1341	WP_305439866.1	sigma-54 dependent transcriptional regulator	Regulator
PSH79_RS23545 (PSH79_23540)	thiO	5258764..5259864 (-)	1101	WP_305439867.1	glycine oxidase ThiO	-
PSH79_RS23550 (PSH79_23545)	-	5259922..5260323 (-)	402	WP_305439868.1	type IV pilin protein	-
PSH79_RS23555 (PSH79_23550)	-	5260339..5263428 (-)	3090	WP_305439870.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49870.30 Da
• Isoelectric Point: 6.4283

>NTDB_id=785297 PSH79_RS23540 WP_305439866.1 5257294..5258634(+) (pilR) [Pseudomonas sp. FP2196]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQREAFDLCLTDMRLPDGTGLELVQHIQHRYPQLPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPAVGGVSVSIDRRLLGDSLPMRTLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAIEDKPGLFQAAHGGTLFLDEVADL
PLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVATERFRQDLYYRLNVIELRVPSLRERRDDIEVLAAH
MLQRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRVIEAEDLRLSEGNCAADGAIADLTQIDNLE
DYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=785297 PSH79_RS23540 WP_305439866.1 5257294..5258634(+) (pilR) [Pseudomonas sp. FP2196]
ATGAGCCCACGGCAAAAAGTCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTCGAAATCACCCTGGGAAGGAT
GAAACTCGACACCTTCAGCGCACGCAATCTTGGCGAAGCCCAAGCGTTGCTGCAGCGCGAGGCCTTTGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACGGGGCTGGAACTGGTGCAGCACATCCAGCACCGTTATCCCCAGTTGCCGGTGGCG
ATGATTACCGCGTATGGCAGCCTCGAAACGGCGATCAACGCGCTGAAGGCCGGCGCGTTCGACTTTCTCACCAAGCCGGT
GGATCTGACACGATTACGCGAACTGGTCGCAACAGCGCTGCGCATGCCGGCGGTGGGCGGCGTTTCTGTCTCGATTGATC
GACGATTGCTTGGCGATTCATTACCGATGCGCACGCTGCGCAAACAAATCGACAAACTGGCTCGCAGTCAGGCACCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAAGAGTTGGTTGCGCGACTGATTCACGAACAAGGTCCGCGTGCCGGCCAACC
GTTTGTACCGGTCAATTGCGGGGCGATTCCTTCGGAGCTGATGGAAAGCGAGTTTTTCGGTCATCGCAAAGGCAGTTTCA
CTGGCGCGATCGAGGACAAGCCGGGGCTGTTTCAGGCCGCACACGGCGGCACGTTATTTCTTGATGAAGTGGCAGACTTG
CCACTCTCGATGCAGGTCAAGTTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTTGGCGGCCAGCAGGAAACCGT
GGTTGATGTACGAATACTCTGCGCCACGCACAAGGATCTCGATGCAGAAGTTGCCACCGAGCGTTTTCGCCAGGATCTGT
ATTACCGACTCAACGTGATTGAGTTGCGTGTACCGTCGCTGCGCGAGCGCCGCGATGACATTGAAGTGCTGGCGGCTCAC
ATGCTCCAGCGCTTGGCCAAAGACACCGGGCAACCAGCTGCGCGCCTGCATCCGCAGGCGTTGGAAGCGCTGAAAAATTA
TCGCTTTCCGGGCAATGTGCGGGAATTGGAGAATGTTCTCGAACGCGCGCACACCTTGTGCGAGAACCGCGTGATCGAGG
CTGAAGACCTGCGCTTGAGCGAAGGCAACTGCGCGGCGGATGGCGCGATTGCGGATTTGACACAGATCGACAATCTGGAG
GATTACCTGGAGAGCGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCCGCGGCGCA
ACGGCTGAGTCTTTCATTCAGGTCGATGCGCTACAGACTGAAAAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	49.02	100	0.504
luxO	Vibrio cholerae strain A1552	37.613	99.552	0.374