Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH79_RS23535 Genome accession   NZ_CP117445
Coordinates   5255702..5257291 (+) Length   529 a.a.
NCBI ID   WP_305444071.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2196     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5250702..5262291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS23515 (PSH79_23510) pgeF 5252503..5253225 (-) 723 WP_305439863.1 peptidoglycan editing factor PgeF -
  PSH79_RS23520 (PSH79_23515) rluD 5253222..5254184 (-) 963 WP_305439864.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH79_RS23525 (PSH79_23520) - 5254336..5255352 (+) 1017 WP_187679215.1 outer membrane protein assembly factor BamD -
  PSH79_RS23530 (PSH79_23525) - 5255479..5255712 (+) 234 WP_305439865.1 PP0621 family protein -
  PSH79_RS23535 (PSH79_23530) pilS 5255702..5257291 (+) 1590 WP_305444071.1 PAS domain-containing sensor histidine kinase Regulator
  PSH79_RS23540 (PSH79_23535) pilR 5257294..5258634 (+) 1341 WP_305439866.1 sigma-54 dependent transcriptional regulator Regulator
  PSH79_RS23545 (PSH79_23540) thiO 5258764..5259864 (-) 1101 WP_305439867.1 glycine oxidase ThiO -
  PSH79_RS23550 (PSH79_23545) - 5259922..5260323 (-) 402 WP_305439868.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58552.31 Da        Isoelectric Point: 6.8659

>NTDB_id=785296 PSH79_RS23535 WP_305444071.1 5255702..5257291(+) (pilS) [Pseudomonas sp. FP2196]
MIAEAANADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVASAFGNLLVVSVAISNTLLRRRIGLLIAAIAALGIVALSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQTLLAQSHLQGHLID
DYSPALVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALKQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQATER
QQIHLRINSGDFTTLMDPNQLTQILDNLVRNGWRHSALLHEHAEVWLSLFMDLDSQLAVLEVQDNGPGVALDEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785296 PSH79_RS23535 WP_305444071.1 5255702..5257291(+) (pilS) [Pseudomonas sp. FP2196]
GTGATCGCTGAGGCCGCCAACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTCTACCGTTTAAGTGT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGTTGGCTGTATCTGGTGCTGAACATTCTTCTGGTAGTGTTTCTTGAAAACACCCGGCGGCCCGCGCAACTGTTC
AGCTTGGCCCTTGTCGATGTGCTGCTGCTGTGCGGTTTGTTCTTTGCGGCGGGCGGAGTCGCCAGCGCCTTCGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCTGCTATTGCAGCGCTTG
GCATTGTGGCCCTGAGCTTCCTGTTGAGTTTCAGTCATCCGCTGAGCGCCAATGAATACTTGCAAGCGGGCACCCTCGGT
GCTTTGTGTTTTGCTGCCTCGTTACTGGTGCAGGGGCTGATCCGGCGTCTTGAAGTCAGTGAAACCCTGGCTGAGCAGCG
GGCCAGCGAAGTGGTCGGCCTGGAAGCCCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATTCTGGTGCTCGACG
AACAGCGCCGCGTCCAACTGGCCAATCACAGCGCCCAGACCTTGCTCGCGCAGTCGCACCTTCAAGGCCATTTGATCGAC
GATTATTCACCCGCGCTAGTCGATCGCCTGCAATTGTGGATGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAGCCAAGCTTCATCGCCCTCAAACAGAGCCCCAATCAACAGACACTGGTGTTTCTCGAAG
ACCTCGCACAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCGCTCGGGCGCCTGACCGCCGGTATCTCTCACGAA
ATTCGCAATCCGCTGGGGGCCATCAGTCACGCCGCACAGCTATTGGGGGAATCCGAGGAACTCGATGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGATCACTCCCAACGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAAGCGCGCCGCAACGGCTGGATCTAAAGCCGTGGCTGGAAAACTTTGTCGCCGAAAGCCGCGAACAGGCCACCGAGCGC
CAGCAGATTCATCTGCGGATCAACTCGGGCGACTTCACCACCCTGATGGACCCCAACCAACTCACGCAAATTCTCGACAA
TCTGGTACGCAACGGCTGGCGCCACAGCGCCCTGCTGCATGAGCATGCTGAAGTCTGGCTGTCCCTGTTCATGGATCTCG
ACAGCCAACTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGGCGCTCGATGAACAGGCTCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605