Detailed information NTG0785220

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: Q3V66_RS08175
• Genome accession: NZ_CP130543
• Coordinates: 1705301..1706305 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005766.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain SA07-SX
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1700301..1711305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3V66_RS08160	yajC	1702833..1703093 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
Q3V66_RS08165	tgt	1703112..1704251 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
Q3V66_RS08170	queA	1704274..1705299 (-)	1026	WP_001019177.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
Q3V66_RS08175	ruvB	1705301..1706305 (-)	1005	WP_001005766.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Q3V66_RS08180	ruvA	1706337..1706939 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
Q3V66_RS08185	-	1706953..1707408 (-)	456	WP_000368902.1	ACT domain-containing protein	-
Q3V66_RS08190	obgE	1707421..1708713 (-)	1293	WP_000496090.1	GTPase ObgE	-
Q3V66_RS08195	rpmA	1709200..1709484 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
Q3V66_RS08200	-	1709496..1709816 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
Q3V66_RS08205	rplU	1709822..1710130 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
Q3V66_RS08210	mreD	1710617..1711147 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37687.98 Da
• Isoelectric Point: 5.0865

>NTDB_id=785220 Q3V66_RS08175 WP_001005766.1 1705301..1706305(-) (ruvB) [Staphylococcus aureus strain SA07-SX]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=785220 Q3V66_RS08175 WP_001005766.1 1705301..1706305(-) (ruvB) [Staphylococcus aureus strain SA07-SX]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.644	97.605	0.641
ruvB	Streptococcus pneumoniae TIGR4	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae R6	57.576	98.802	0.569
ruvB	Streptococcus pneumoniae D39	57.576	98.802	0.569
ruvB	Helicobacter pylori 26695	56.173	97.006	0.545
ruvB	Synechocystis sp. PCC 6803	54.062	95.808	0.518