Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH59_RS23000 Genome accession   NZ_CP117439
Coordinates   4990948..4991463 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. FP2309     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4985948..4996463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH59_RS22975 (PSH59_22970) - 4986304..4987059 (-) 756 WP_248078714.1 S9 family peptidase -
  PSH59_RS22980 (PSH59_22975) - 4987049..4988158 (-) 1110 WP_305393748.1 DUF3182 family protein -
  PSH59_RS22985 (PSH59_22980) - 4988330..4989289 (-) 960 WP_305393749.1 GlxA family transcriptional regulator -
  PSH59_RS22990 (PSH59_22985) - 4989386..4989949 (+) 564 WP_305393750.1 cysteine hydrolase family protein -
  PSH59_RS22995 (PSH59_22990) tam 4989971..4990732 (-) 762 WP_305393751.1 trans-aconitate 2-methyltransferase -
  PSH59_RS23000 (PSH59_22995) ssb 4990948..4991463 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  PSH59_RS23005 (PSH59_23000) - 4991473..4992867 (-) 1395 WP_248078721.1 MFS transporter -
  PSH59_RS23010 (PSH59_23005) uvrA 4993046..4995880 (+) 2835 WP_248078723.1 excinuclease ABC subunit UvrA -
  PSH59_RS23015 (PSH59_23010) bfr 4995946..4996410 (-) 465 WP_248078726.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=785140 PSH59_RS23000 WP_003232445.1 4990948..4991463(-) (ssb) [Pseudomonas sp. FP2309]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=785140 PSH59_RS23000 WP_003232445.1 4990948..4991463(-) (ssb) [Pseudomonas sp. FP2309]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTGGCAGAAATCGCGGGTGAATACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCACGTCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAGCCCCAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCGCCGCAACCGGCTCCG
GATTTCGACAGTTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474