Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH96_RS26040 Genome accession   NZ_CP117436
Coordinates   5748963..5749490 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. FP2338     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5743963..5754490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH96_RS26015 (PSH96_26010) - 5744438..5745193 (-) 756 WP_065930336.1 S9 family peptidase -
  PSH96_RS26020 (PSH96_26015) - 5745183..5746292 (-) 1110 WP_305456053.1 DUF3182 family protein -
  PSH96_RS26025 (PSH96_26020) - 5746542..5747105 (+) 564 WP_305456055.1 cysteine hydrolase family protein -
  PSH96_RS26030 (PSH96_26025) tam 5747123..5747884 (-) 762 WP_305456057.1 trans-aconitate 2-methyltransferase -
  PSH96_RS26035 (PSH96_26030) - 5747987..5748895 (+) 909 WP_305456059.1 LysR family transcriptional regulator -
  PSH96_RS26040 (PSH96_26035) ssb 5748963..5749490 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  PSH96_RS26045 (PSH96_26040) - 5749500..5750894 (-) 1395 WP_305456061.1 MFS transporter -
  PSH96_RS26050 (PSH96_26045) uvrA 5751073..5753907 (+) 2835 WP_065930321.1 excinuclease ABC subunit UvrA -
  PSH96_RS26055 (PSH96_26050) bfr 5753975..5754439 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=785070 PSH96_RS26040 WP_010467282.1 5748963..5749490(-) (ssb) [Pseudomonas sp. FP2338]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=785070 PSH96_RS26040 WP_010467282.1 5748963..5749490(-) (ssb) [Pseudomonas sp. FP2338]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCTATGTTCGGCAAGGTTGCAGAGATCGCTGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTAGTCGACATGCAAGGCAC
CATGCAGCTGTTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCACAGCAGTCGGCCCCGCAACAGTCGCGCCAGGCACCGCCTCCACAGCAGGCCGCTCCA
CAGCCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491