Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH74_RS24495 | Genome accession | NZ_CP117426 |
| Coordinates | 5439124..5439993 (+) | Length | 289 a.a. |
| NCBI ID | WP_305416169.1 | Uniprot ID | - |
| Organism | Pseudomonas hefeiensis strain FP821 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5434124..5444993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH74_RS24470 (PSH74_24470) | - | 5434302..5434598 (+) | 297 | WP_305385929.1 | DUF2845 domain-containing protein | - |
| PSH74_RS24475 (PSH74_24475) | - | 5434924..5435277 (-) | 354 | WP_305385930.1 | BON domain-containing protein | - |
| PSH74_RS24480 (PSH74_24480) | pilA | 5435557..5435976 (-) | 420 | WP_305385931.1 | pilin | Machinery gene |
| PSH74_RS24485 (PSH74_24485) | pilB | 5436202..5437902 (+) | 1701 | WP_305385932.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH74_RS24490 (PSH74_24490) | pilC | 5437905..5439122 (+) | 1218 | WP_305385933.1 | type II secretion system F family protein | Machinery gene |
| PSH74_RS24495 (PSH74_24495) | pilD | 5439124..5439993 (+) | 870 | WP_305416169.1 | A24 family peptidase | Machinery gene |
| PSH74_RS24500 (PSH74_24500) | coaE | 5440005..5440628 (+) | 624 | WP_305385934.1 | dephospho-CoA kinase | - |
| PSH74_RS24505 (PSH74_24505) | yacG | 5440625..5440825 (+) | 201 | WP_305385935.1 | DNA gyrase inhibitor YacG | - |
| PSH74_RS24510 (PSH74_24510) | - | 5440926..5441141 (-) | 216 | WP_305385936.1 | hypothetical protein | - |
| PSH74_RS24515 (PSH74_24515) | - | 5441205..5441891 (-) | 687 | WP_305385937.1 | energy-coupling factor ABC transporter permease | - |
| PSH74_RS24520 (PSH74_24520) | - | 5442036..5442662 (+) | 627 | WP_305385938.1 | DUF1780 domain-containing protein | - |
| PSH74_RS24525 (PSH74_24525) | - | 5442659..5443186 (+) | 528 | WP_305385939.1 | MOSC domain-containing protein | - |
| PSH74_RS24530 (PSH74_24530) | - | 5443239..5443412 (+) | 174 | WP_214918225.1 | DUF3094 domain-containing protein | - |
| PSH74_RS24535 (PSH74_24535) | - | 5443473..5444771 (+) | 1299 | WP_305385940.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31818.94 Da Isoelectric Point: 8.0493
>NTDB_id=784817 PSH74_RS24495 WP_305416169.1 5439124..5439993(+) (pilD) [Pseudomonas hefeiensis strain FP821]
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS
Nucleotide
Download Length: 870 bp
>NTDB_id=784817 PSH74_RS24495 WP_305416169.1 5439124..5439993(+) (pilD) [Pseudomonas hefeiensis strain FP821]
ATGCCCCTGACTGAGTTTTTCGCGCTTTATCCCCTGGCCTTCGTGCTCGCCGCGTTATTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATTCCGCTGCTCAGCTACCTGGCGTTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
TTATCCCTTGACGGAGCTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTCAGTTGGGGCCTGCTGGGCATGAGCCTGATTGATGCCGAGCACCAATTGTTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCTCCTTGAACCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGTTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCACCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA
ATGCCCCTGACTGAGTTTTTCGCGCTTTATCCCCTGGCCTTCGTGCTCGCCGCGTTATTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAATATTCCGCTGCTCAGCTACCTGGCGTTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
TTATCCCTTGACGGAGCTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTCAGTTGGGGCCTGCTGGGCATGAGCCTGATTGATGCCGAGCACCAATTGTTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCTCCTTGAACCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGTTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCACCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.169 |
98.27 |
0.522 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.616 |
0.498 |
| pilD | Acinetobacter nosocomialis M2 |
48.905 |
94.81 |
0.464 |
| pilD | Acinetobacter baumannii D1279779 |
48.905 |
94.81 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
45.993 |
99.308 |
0.457 |