Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q3V78_RS03615 Genome accession   NZ_CP130538
Coordinates   762700..763782 (+) Length   360 a.a.
NCBI ID   WP_117197248.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA11-SX     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757700..768782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS03595 - 758070..759140 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  Q3V78_RS03600 - 759458..760513 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  Q3V78_RS03605 - 760685..761326 (-) 642 WP_000192947.1 YigZ family protein -
  Q3V78_RS03610 fakB1 761470..762336 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  Q3V78_RS03615 comFA 762700..763782 (+) 1083 WP_117197248.1 DEAD/DEAH box helicase Machinery gene
  Q3V78_RS03620 - 763775..764449 (+) 675 WP_001057965.1 ComF family protein -
  Q3V78_RS03625 raiA 764510..765082 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  Q3V78_RS03630 secA 765496..768027 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  Q3V78_RS03635 - 768069..768167 (+) 99 Protein_706 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41994.51 Da        Isoelectric Point: 9.7563

>NTDB_id=784814 Q3V78_RS03615 WP_117197248.1 762700..763782(+) (comFA) [Staphylococcus aureus strain SA11-SX]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKKLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYIHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=784814 Q3V78_RS03615 WP_117197248.1 762700..763782(+) (comFA) [Staphylococcus aureus strain SA11-SX]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGGCGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAAAAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATATCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367