Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH84_RS25400 Genome accession   NZ_CP117425
Coordinates   5720004..5720531 (-) Length   175 a.a.
NCBI ID   WP_305481978.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP830     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5715004..5725531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH84_RS25390 (PSH84_25385) - 5717210..5718526 (-) 1317 WP_122566152.1 MFS transporter -
  PSH84_RS25395 (PSH84_25390) - 5718736..5719803 (+) 1068 WP_305481977.1 LacI family DNA-binding transcriptional regulator -
  PSH84_RS25400 (PSH84_25395) ssb 5720004..5720531 (-) 528 WP_305481978.1 single-stranded DNA-binding protein Machinery gene
  PSH84_RS25405 (PSH84_25400) - 5720541..5721938 (-) 1398 WP_122566149.1 MFS transporter -
  PSH84_RS25410 (PSH84_25405) uvrA 5722118..5724953 (+) 2836 Protein_4999 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19537.73 Da        Isoelectric Point: 5.9455

>NTDB_id=784792 PSH84_RS25400 WP_305481978.1 5720004..5720531(-) (ssb) [Pseudomonas beijingensis strain FP830]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQQSAPQPQPQRERPAAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=784792 PSH84_RS25400 WP_305481978.1 5720004..5720531(-) (ssb) [Pseudomonas beijingensis strain FP830]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCCGAGATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGTGGCCGTCCTCAGGGCGACCAGCAGCAAGGTGGCAACAACTACCAGCAGTCGGCCCCGCGTCAGC
AGGCTCCTCGTCCGCAGCAGTCGGCCCCACAGCCACAGCCACAGCGCGAGCGCCCGGCGGCTCCACAGCAGGCCGCGCCG
CAGCCGGCTCCGGATTTTGACAGCTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.564

100

0.606
  ssb Neisseria meningitidis MC58

48.901

100

0.509
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.889

100

0.503