Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSH63_RS29720 Genome accession   NZ_CP117424
Coordinates   6432423..6432938 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. FP833     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 6431273..6432289 6432423..6432938 flank 134


Gene organization within MGE regions


Location: 6431273..6432938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH63_RS29715 (PSH63_29710) - 6431273..6432289 (-) 1017 WP_305452510.1 IS110 family transposase -
  PSH63_RS29720 (PSH63_29715) ssb 6432423..6432938 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=784765 PSH63_RS29720 WP_003232445.1 6432423..6432938(-) (ssb) [Pseudomonas sp. FP833]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=784765 PSH63_RS29720 WP_003232445.1 6432423..6432938(-) (ssb) [Pseudomonas sp. FP833]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCAGAGATCGCCGGTGAATACCTGCGCAAAGGCTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCCCGTCCGCAGCCAAGCCAGCAGCCACAACGTGAGTCGCGCCCAGCGCCACAACAGGCCGCTCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474