Detailed information NTG0784415

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: Q3V74_RS07835
• Genome accession: NZ_CP130531
• Coordinates: 1646837..1647841 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain SA16-SX
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1641837..1652841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3V74_RS07820	yajC	1644369..1644629 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
Q3V74_RS07825	tgt	1644648..1645787 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
Q3V74_RS07830	queA	1645810..1646835 (-)	1026	WP_001019166.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
Q3V74_RS07835	ruvB	1646837..1647841 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Q3V74_RS07840	ruvA	1647873..1648475 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
Q3V74_RS07845	-	1648489..1648944 (-)	456	WP_000368900.1	ACT domain-containing protein	-
Q3V74_RS07850	obgE	1648957..1650249 (-)	1293	WP_000496105.1	GTPase ObgE	-
Q3V74_RS07855	rpmA	1651005..1651289 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
Q3V74_RS07860	-	1651301..1651621 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
Q3V74_RS07865	rplU	1651627..1651935 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
Q3V74_RS07870	mreD	1652171..1652701 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=784415 Q3V74_RS07835 WP_001005767.1 1646837..1647841(-) (ruvB) [Staphylococcus aureus strain SA16-SX]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=784415 Q3V74_RS07835 WP_001005767.1 1646837..1647841(-) (ruvB) [Staphylococcus aureus strain SA16-SX]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCATGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515