Detailed information NTG0784147

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: Q3V89_RS07925
• Genome accession: NZ_CP130526
• Coordinates: 1668888..1669892 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain SA19-SX
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1663888..1674892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3V89_RS07910	yajC	1666420..1666680 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
Q3V89_RS07915	tgt	1666699..1667838 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
Q3V89_RS07920	queA	1667861..1668886 (-)	1026	WP_001019166.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
Q3V89_RS07925	ruvB	1668888..1669892 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Q3V89_RS07930	ruvA	1669924..1670526 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
Q3V89_RS07935	-	1670540..1670995 (-)	456	WP_000368900.1	ACT domain-containing protein	-
Q3V89_RS07940	obgE	1671008..1672300 (-)	1293	WP_000496105.1	GTPase ObgE	-
Q3V89_RS07945	rpmA	1673056..1673340 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
Q3V89_RS07950	-	1673352..1673672 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
Q3V89_RS07955	rplU	1673678..1673986 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
Q3V89_RS07960	mreD	1674222..1674752 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=784147 Q3V89_RS07925 WP_001005767.1 1668888..1669892(-) (ruvB) [Staphylococcus aureus strain SA19-SX]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=784147 Q3V89_RS07925 WP_001005767.1 1668888..1669892(-) (ruvB) [Staphylococcus aureus strain SA19-SX]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCATGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515