Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   MTP06_RS03150 Genome accession   NZ_AP025692
Coordinates   832837..833922 (-) Length   361 a.a.
NCBI ID   WP_003947059.1    Uniprot ID   A0ABR4S7T2
Organism   Streptomyces sp. PLM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 827837..838922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP06_RS03125 (MTP06_06370) - 828054..828461 (-) 408 WP_129807377.1 hypothetical protein -
  MTP06_RS03130 (MTP06_06380) - 828661..829200 (-) 540 WP_248493583.1 adenine phosphoribosyltransferase -
  MTP06_RS03135 (MTP06_06390) secF 829197..830333 (-) 1137 WP_003947056.1 protein translocase subunit SecF -
  MTP06_RS03140 (MTP06_06400) secD 830335..832080 (-) 1746 WP_248493585.1 protein translocase subunit SecD -
  MTP06_RS03145 (MTP06_06410) yajC 832219..832674 (-) 456 WP_018471455.1 preprotein translocase subunit YajC -
  MTP06_RS03150 (MTP06_06420) ruvB 832837..833922 (-) 1086 WP_003947059.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MTP06_RS03155 (MTP06_06430) ruvA 833991..834617 (-) 627 WP_248493587.1 Holliday junction branch migration protein RuvA -
  MTP06_RS03160 (MTP06_06440) ruvC 834614..835186 (-) 573 WP_003947061.1 crossover junction endodeoxyribonuclease RuvC -
  MTP06_RS03165 (MTP06_06450) - 835398..836150 (-) 753 WP_030766271.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MTP06_RS03170 (MTP06_06460) pdxT 836283..836876 (-) 594 WP_248493589.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  MTP06_RS03175 (MTP06_06470) pdxS 836880..837794 (-) 915 WP_003947064.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  MTP06_RS03180 (MTP06_06480) - 837923..838459 (-) 537 WP_031177468.1 membrane protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38421.82 Da        Isoelectric Point: 4.9137

>NTDB_id=78344 MTP06_RS03150 WP_003947059.1 832837..833922(-) (ruvB) [Streptomyces sp. PLM4]
MNPYETEPAPHGADEDGHRLVGSVADGEDTAVEAALRPKELGEFIGQEKVRAQLDLVLKAARARGATADHVLLSGAPGLG
KTTLSMIIAAEMEAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATA
IPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYGPAELERVVHRSARLLDVEIDTEGAAEIAGRSRGTPRIANRLL
RRVRDYAQVKADGAVDREIASAALAVYEVDARGLDRLDRSVLEALLKLFGGGPVGLSTLSVAVGEERETVEEVAEPFLVR
EGLLARTPRGRVATPAAWAHLGLTPPRQVPGGPGQGDLFAG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=78344 MTP06_RS03150 WP_003947059.1 832837..833922(-) (ruvB) [Streptomyces sp. PLM4]
GTGAACCCGTACGAGACCGAGCCCGCCCCCCACGGCGCCGACGAGGACGGCCACCGGCTGGTGGGCTCCGTCGCCGACGG
CGAGGACACCGCCGTCGAGGCCGCCCTGCGCCCCAAGGAACTGGGCGAGTTCATCGGGCAGGAGAAGGTCCGCGCCCAGC
TCGACCTGGTCCTCAAGGCCGCCCGGGCCCGTGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGC
AAGACCACCCTGTCGATGATCATCGCGGCCGAGATGGAAGCCCCCATCCGGATCACCTCAGGACCCGCCATCCAGCACGC
CGGCGACCTGGCCGCGATCCTCTCCTCCCTCCAGGAGGGTGAGGTGCTGTTCCTCGACGAGATCCACCGCATGTCCCGGC
CCGCCGAGGAGATGCTGTACATGGCCATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCC
ATCCCGCTGGAACTCCCCCCGTTCACCCTGGTCGGCGCCACCACCCGCGCCGGGCTGCTGCCCCCGCCGCTGCGCGACCG
GTTCGGCTTCACCGGCCACATGGAGTTCTACGGCCCGGCCGAACTGGAGCGCGTCGTCCACCGCTCCGCCCGCCTGCTCG
ACGTCGAGATCGACACCGAGGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGCCTGCTG
CGCCGCGTCCGCGACTACGCCCAGGTCAAGGCGGACGGCGCCGTCGACCGGGAGATCGCCTCGGCGGCCCTCGCGGTCTA
CGAGGTCGACGCCCGGGGCCTGGACCGGCTCGACCGCTCGGTCCTGGAGGCGCTGCTGAAGCTGTTCGGCGGGGGACCGG
TCGGGCTCTCCACCCTCTCCGTCGCGGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTGGCCGAGCCCTTCCTCGTCCGC
GAAGGGCTGCTCGCCCGGACCCCCCGGGGCCGCGTCGCCACCCCCGCGGCCTGGGCACACCTCGGGCTGACCCCGCCCCG
GCAGGTTCCGGGCGGACCGGGGCAAGGCGACCTCTTCGCGGGCTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(272-341)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(36-194)

RuvB AAA lid domain (AAA_lid_4)

(197-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.407

91.136

0.496
  ruvB Streptococcus pneumoniae TIGR4

53.086

89.751

0.476
  ruvB Streptococcus pneumoniae R6

53.086

89.751

0.476
  ruvB Streptococcus pneumoniae D39

53.086

89.751

0.476
  ruvB Synechocystis sp. PCC 6803

53.185

86.981

0.463
  ruvB Helicobacter pylori 26695

52.145

83.934

0.438

Multiple sequence alignment