Detailed information    

insolico Bioinformatically predicted

Overview


Name   vicR   Type   Regulator
Locus tag   MGGS36055_RS03430 Genome accession   NZ_CP117286
Coordinates   626589..627296 (+) Length   235 a.a.
NCBI ID   WP_003055001.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 621589..632296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGGS36055_RS03405 (MGGS36055_01372) - 621618..623042 (+) 1425 WP_015016792.1 glycoside hydrolase family 1 protein -
  MGGS36055_RS03410 (MGGS36055_01374) - 623141..623956 (-) 816 WP_042357866.1 TIGR03943 family protein -
  MGGS36055_RS03415 (MGGS36055_01376) - 623956..624858 (-) 903 WP_015016794.1 permease -
  MGGS36055_RS03420 (MGGS36055_01378) - 625240..625851 (-) 612 WP_015016795.1 NUDIX hydrolase N-terminal domain-containing protein -
  MGGS36055_RS03425 (MGGS36055_01380) - 626020..626502 (+) 483 WP_015016796.1 cupin domain-containing protein -
  MGGS36055_RS03430 (MGGS36055_01382) vicR 626589..627296 (+) 708 WP_003055001.1 response regulator transcription factor Regulator
  MGGS36055_RS03435 (MGGS36055_01384) - 627297..628625 (+) 1329 WP_012766697.1 ATP-binding protein -
  MGGS36055_RS03440 (MGGS36055_01386) - 628792..629667 (+) 876 WP_022554379.1 substrate-binding domain-containing protein -
  MGGS36055_RS03445 (MGGS36055_01388) pstC 629784..630647 (+) 864 WP_012766699.1 phosphate ABC transporter permease subunit PstC -
  MGGS36055_RS03450 (MGGS36055_01390) pstA 630640..631455 (+) 816 WP_003060853.1 phosphate ABC transporter permease PstA -
  MGGS36055_RS03455 (MGGS36055_01392) pstB 631457..632209 (+) 753 WP_003055005.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence


Protein


Download         Length: 235 a.a.        Molecular weight: 27491.70 Da        Isoelectric Point: 5.4461

>NTDB_id=783265 MGGS36055_RS03430 WP_003055001.1 626589..627296(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055]
MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIEVCKRLRAKGIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=783265 MGGS36055_RS03430 WP_003055001.1 626589..627296(+) (vicR) [Streptococcus dysgalactiae subsp. equisimilis strain MGGS36055]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACACATTTTGAGGCTACTGGATTATCATCTCGGTAAAGAAGGGTT
TTCCACACAATTGGTAACAGATGGCCGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGACTTTATCCTACTGGATA
TTATGTTGCCTCAGTTAGACGGCATAGAAGTGTGTAAGCGACTGAGAGCTAAAGGAATAAAAACTCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTGGAATTAGGAGCTGATGACTACCTGACTAAGCCTTTTAGCCC
TAGAGAATTGCTGGCGCGTGTCAAGGCTATTTTACGTCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCGGGTATTTGGGGCCCTGACCGTCTATCCAGACCGGCATGAGGTTTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTGCTCTATCTTATGAAACATCCCAACATGACATTAACTAGGGAACGTTTACTTGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAATCCTAAAGACCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

49.145

99.574

0.489

  micA Streptococcus pneumoniae Cp1015

47.619

98.298

0.468

  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.772

100

0.421

  covR Streptococcus salivarius strain HSISS4

40.506

100

0.409