Detailed information NTG0078319

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SAJP025_RS08320
• Genome accession: NZ_AP025683
• Coordinates: 1725211..1725897 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain JP025
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1720211..1730897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAJP025_RS08275 (SAJP025_15830)	rpmA	1720925..1721209 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAJP025_RS08280 (SAJP025_15840)	-	1721221..1721541 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAJP025_RS08285 (SAJP025_15850)	rplU	1721547..1721855 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SAJP025_RS08290 (SAJP025_15860)	mreD	1722148..1722678 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
SAJP025_RS08295 (SAJP025_15870)	mreC	1722678..1723520 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SAJP025_RS08300	-	1723720..1723839 (-)	120	WP_000840603.1	hypothetical protein	-
SAJP025_RS08305 (SAJP025_15880)	-	1723913..1724386 (-)	474	WP_001236733.1	DUF4930 family protein	-
SAJP025_RS08310 (SAJP025_15890)	-	1724546..1724743 (+)	198	WP_000025835.1	hypothetical protein	-
SAJP025_RS08315 (SAJP025_15900)	-	1724859..1725143 (-)	285	WP_000171861.1	hypothetical protein	-
SAJP025_RS08320 (SAJP025_15910)	ysxA/radC	1725211..1725897 (-)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
SAJP025_RS08325	-	1725894..1726439 (-)	546	Protein_1637	A24 family peptidase	-
SAJP025_RS08330 (SAJP025_15920)	-	1726550..1727497 (+)	948	WP_000121211.1	IS30-like element ISSau1 family transposase	-
SAJP025_RS08335	-	1727508..1727675 (-)	168	Protein_1639	prepilin peptidase	-
SAJP025_RS08340 (SAJP025_15930)	-	1727936..1729207 (-)	1272	WP_001108339.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=78319 SAJP025_RS08320 WP_000692886.1 1725211..1725897(-) (ysxA/radC) [Staphylococcus aureus strain JP025]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=78319 SAJP025_RS08320 WP_000692886.1 1725211..1725897(-) (ysxA/radC) [Staphylococcus aureus strain JP025]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377