Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PQQ27_RS05280 | Genome accession | NZ_CP117238 |
| Coordinates | 1057283..1057753 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain ATCC 23235 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1047709..1091621 | 1057283..1057753 | within | 0 |
Gene organization within MGE regions
Location: 1047709..1091621
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ27_RS05205 (PQQ27_05205) | - | 1047709..1049094 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| PQQ27_RS05210 (PQQ27_05210) | - | 1049152..1050081 (-) | 930 | WP_001253415.1 | DUF5067 domain-containing protein | - |
| PQQ27_RS05215 (PQQ27_05215) | - | 1050099..1050557 (-) | 459 | WP_000521395.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PQQ27_RS05220 (PQQ27_05220) | - | 1050579..1050893 (-) | 315 | WP_001118607.1 | helix-turn-helix transcriptional regulator | - |
| PQQ27_RS05225 (PQQ27_05225) | - | 1051046..1051258 (+) | 213 | WP_000132644.1 | helix-turn-helix transcriptional regulator | - |
| PQQ27_RS05230 (PQQ27_05230) | - | 1051335..1052099 (+) | 765 | WP_001148560.1 | phage antirepressor | - |
| PQQ27_RS05235 (PQQ27_05235) | - | 1052116..1052310 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| PQQ27_RS05240 (PQQ27_05240) | - | 1052514..1052744 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| PQQ27_RS05245 (PQQ27_05245) | - | 1052794..1052940 (+) | 147 | WP_000230553.1 | hypothetical protein | - |
| PQQ27_RS05250 (PQQ27_05250) | - | 1052924..1053085 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| PQQ27_RS05255 (PQQ27_05255) | - | 1053178..1053438 (+) | 261 | WP_000291487.1 | DUF1108 family protein | - |
| PQQ27_RS05260 (PQQ27_05260) | - | 1053447..1053710 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| PQQ27_RS05265 (PQQ27_05265) | - | 1053719..1055662 (+) | 1944 | WP_000700567.1 | AAA family ATPase | - |
| PQQ27_RS05270 (PQQ27_05270) | - | 1055664..1056584 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| PQQ27_RS05275 (PQQ27_05275) | - | 1056665..1057282 (+) | 618 | WP_072460574.1 | MBL fold metallo-hydrolase | - |
| PQQ27_RS05280 (PQQ27_05280) | ssbA | 1057283..1057753 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| PQQ27_RS05285 (PQQ27_05285) | - | 1057783..1058667 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| PQQ27_RS05290 (PQQ27_05290) | - | 1058674..1058892 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| PQQ27_RS05295 (PQQ27_05295) | - | 1058901..1059305 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PQQ27_RS05300 (PQQ27_05300) | - | 1059318..1059686 (+) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| PQQ27_RS05305 (PQQ27_05305) | - | 1059690..1059932 (+) | 243 | WP_000132292.1 | SAV1978 family virulence-associated passenger protein | - |
| PQQ27_RS05310 (PQQ27_05310) | - | 1059946..1060152 (+) | 207 | WP_000693989.1 | hypothetical protein | - |
| PQQ27_RS05315 (PQQ27_05315) | - | 1060155..1060559 (+) | 405 | WP_000695756.1 | hypothetical protein | - |
| PQQ27_RS05320 (PQQ27_05320) | - | 1060556..1060903 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| PQQ27_RS05325 (PQQ27_05325) | - | 1060900..1061433 (+) | 534 | WP_000144697.1 | hypothetical protein | - |
| PQQ27_RS05330 (PQQ27_05330) | - | 1061529..1061834 (+) | 306 | Protein_1009 | acetyltransferase | - |
| PQQ27_RS05335 (PQQ27_05335) | - | 1061827..1061952 (+) | 126 | Protein_1010 | DUF1024 family protein | - |
| PQQ27_RS05340 (PQQ27_05340) | - | 1062308..1062844 (+) | 537 | WP_001066444.1 | dUTPase | - |
| PQQ27_RS05345 (PQQ27_05345) | - | 1062881..1063069 (+) | 189 | WP_115172208.1 | DUF1381 domain-containing protein | - |
| PQQ27_RS05350 (PQQ27_05350) | - | 1063044..1063244 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| PQQ27_RS05355 (PQQ27_05355) | - | 1063247..1063420 (+) | 174 | WP_001806316.1 | transcriptional activator RinB | - |
| PQQ27_RS05360 (PQQ27_05360) | - | 1063421..1063567 (+) | 147 | WP_000989997.1 | hypothetical protein | - |
| PQQ27_RS05365 (PQQ27_05365) | - | 1063582..1064001 (+) | 420 | WP_000058633.1 | transcriptional regulator | - |
| PQQ27_RS05370 (PQQ27_05370) | - | 1064188..1064682 (+) | 495 | WP_001004406.1 | terminase small subunit | - |
| PQQ27_RS05375 (PQQ27_05375) | - | 1064685..1065980 (+) | 1296 | WP_031869843.1 | PBSX family phage terminase large subunit | - |
| PQQ27_RS05380 (PQQ27_05380) | - | 1065991..1067526 (+) | 1536 | WP_000921884.1 | phage portal protein | - |
| PQQ27_RS05385 (PQQ27_05385) | - | 1067533..1068528 (+) | 996 | WP_001806313.1 | minor capsid protein | - |
| PQQ27_RS05390 (PQQ27_05390) | - | 1068601..1068771 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| PQQ27_RS05395 (PQQ27_05395) | - | 1068906..1069520 (+) | 615 | WP_000354309.1 | DUF4355 domain-containing protein | - |
| PQQ27_RS05400 (PQQ27_05400) | - | 1069534..1070508 (+) | 975 | WP_000438508.1 | phage major capsid protein | - |
| PQQ27_RS05405 (PQQ27_05405) | - | 1070530..1070817 (+) | 288 | WP_001114090.1 | hypothetical protein | - |
| PQQ27_RS05410 (PQQ27_05410) | - | 1070826..1071158 (+) | 333 | WP_000208957.1 | phage head-tail connector protein | - |
| PQQ27_RS05415 (PQQ27_05415) | - | 1071155..1071457 (+) | 303 | WP_001270300.1 | hypothetical protein | - |
| PQQ27_RS05420 (PQQ27_05420) | - | 1071457..1071804 (+) | 348 | WP_001017810.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| PQQ27_RS05425 (PQQ27_05425) | - | 1071816..1072199 (+) | 384 | WP_000188655.1 | hypothetical protein | - |
| PQQ27_RS05430 (PQQ27_05430) | - | 1072219..1072800 (+) | 582 | WP_000002581.1 | phage major tail protein, TP901-1 family | - |
| PQQ27_RS05435 (PQQ27_05435) | - | 1072863..1073228 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| PQQ27_RS05440 (PQQ27_05440) | - | 1073258..1073602 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| PQQ27_RS05445 (PQQ27_05445) | - | 1073619..1077083 (+) | 3465 | WP_000141467.1 | hypothetical protein | - |
| PQQ27_RS05450 (PQQ27_05450) | - | 1077096..1078043 (+) | 948 | WP_000350684.1 | phage tail family protein | - |
| PQQ27_RS05455 (PQQ27_05455) | - | 1078052..1079953 (+) | 1902 | WP_000156405.1 | SGNH/GDSL hydrolase family protein | - |
| PQQ27_RS05460 (PQQ27_05460) | - | 1079968..1081878 (+) | 1911 | WP_000369026.1 | hypothetical protein | - |
| PQQ27_RS05465 (PQQ27_05465) | - | 1081878..1083701 (+) | 1824 | WP_000259602.1 | phage baseplate upper protein | - |
| PQQ27_RS05470 (PQQ27_05470) | - | 1083701..1084078 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| PQQ27_RS05475 (PQQ27_05475) | - | 1084082..1084255 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| PQQ27_RS05480 (PQQ27_05480) | - | 1084295..1084594 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| PQQ27_RS05485 (PQQ27_05485) | - | 1084731..1086629 (+) | 1899 | WP_000524015.1 | glucosaminidase domain-containing protein | - |
| PQQ27_RS05490 (PQQ27_05490) | - | 1086642..1087880 (+) | 1239 | WP_000276641.1 | BppU family phage baseplate upper protein | - |
| PQQ27_RS05495 (PQQ27_05495) | - | 1087886..1088281 (+) | 396 | WP_000398891.1 | hypothetical protein | - |
| PQQ27_RS05500 (PQQ27_05500) | - | 1088339..1088593 (+) | 255 | WP_000611512.1 | phage holin | - |
| PQQ27_RS05505 (PQQ27_05505) | - | 1088605..1089360 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| PQQ27_RS05510 (PQQ27_05510) | sak | 1089551..1090042 (+) | 492 | WP_000920038.1 | staphylokinase | - |
| PQQ27_RS05515 (PQQ27_05515) | - | 1090582..1091169 (+) | 588 | WP_000448197.1 | hypothetical protein | - |
| PQQ27_RS05520 (PQQ27_05520) | - | 1091166..1091621 (+) | 456 | WP_000971220.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=783007 PQQ27_RS05280 WP_000934770.1 1057283..1057753(+) (ssbA) [Staphylococcus aureus strain ATCC 23235]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=783007 PQQ27_RS05280 WP_000934770.1 1057283..1057753(+) (ssbA) [Staphylococcus aureus strain ATCC 23235]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |