Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PQQ26_RS01575 Genome accession   NZ_CP117230
Coordinates   358577..359080 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain ATCC 25923     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 358577..377989 358577..359080 within 0


Gene organization within MGE regions


Location: 358577..377989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ26_RS01575 (PQQ26_01575) ssbA 358577..359080 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  PQQ26_RS01580 (PQQ26_01580) rpsR 359132..359374 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  PQQ26_RS01585 (PQQ26_01585) - 359606..360439 (-) 834 WP_000370312.1 type II toxin-antitoxin system PemK/MazF family toxin -
  PQQ26_RS01590 (PQQ26_01590) - 360440..361654 (-) 1215 WP_000270132.1 site-specific integrase -
  PQQ26_RS01595 (PQQ26_01595) - 362110..362805 (-) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  PQQ26_RS01600 (PQQ26_01600) - 362949..363161 (+) 213 WP_000794656.1 helix-turn-helix transcriptional regulator -
  PQQ26_RS01605 (PQQ26_01605) - 363162..363434 (+) 273 WP_000091734.1 helix-turn-helix domain-containing protein -
  PQQ26_RS01610 (PQQ26_01610) - 363446..363592 (+) 147 WP_031824147.1 hypothetical protein -
  PQQ26_RS01615 (PQQ26_01615) - 363585..363794 (+) 210 WP_001058486.1 hypothetical protein -
  PQQ26_RS01620 (PQQ26_01620) - 363797..364120 (+) 324 WP_001103945.1 DUF1474 family protein -
  PQQ26_RS01625 (PQQ26_01625) - 364185..365054 (+) 870 WP_001002723.1 primase alpha helix C-terminal domain-containing protein -
  PQQ26_RS01630 (PQQ26_01630) - 365068..366777 (+) 1710 WP_000447449.1 DUF927 domain-containing protein -
  PQQ26_RS01635 (PQQ26_01635) - 367089..367469 (+) 381 WP_000356936.1 hypothetical protein -
  PQQ26_RS01640 (PQQ26_01640) - 367466..368107 (+) 642 WP_001019780.1 hypothetical protein -
  PQQ26_RS01645 (PQQ26_01645) - 368624..368965 (+) 342 WP_001190612.1 hypothetical protein -
  PQQ26_RS01650 (PQQ26_01650) - 368977..369573 (+) 597 WP_038412914.1 hypothetical protein -
  PQQ26_RS01655 (PQQ26_01655) - 369574..369792 (+) 219 WP_000448775.1 capsid morphogenesis B protein -
  PQQ26_RS01660 (PQQ26_01660) - 369843..370370 (+) 528 WP_000771380.1 spore coat protein -
  PQQ26_RS01665 (PQQ26_01665) - 370502..370714 (+) 213 WP_001656917.1 hypothetical protein -
  PQQ26_RS01670 (PQQ26_01670) - 370711..371280 (+) 570 WP_001293091.1 terminase small subunit -
  PQQ26_RS01675 (PQQ26_01675) - 371327..371410 (+) 84 Protein_332 terminase small subunit -
  PQQ26_RS01680 (PQQ26_01680) - 371557..372525 (+) 969 WP_000801980.1 Abi family protein -
  PQQ26_RS01685 (PQQ26_01685) - 372821..373102 (+) 282 WP_001577971.1 hypothetical protein -
  PQQ26_RS01690 (PQQ26_01690) - 373220..373732 (+) 513 WP_000813311.1 hypothetical protein -
  PQQ26_RS01695 (PQQ26_01695) - 373748..373927 (+) 180 WP_000797954.1 hypothetical protein -
  PQQ26_RS01700 (PQQ26_01700) - 374502..375509 (-) 1008 WP_001080636.1 Abi family protein -
  PQQ26_RS01705 (PQQ26_01705) - 375515..376174 (-) 660 Protein_338 site-specific integrase -
  PQQ26_RS01710 (PQQ26_01710) - 376467..376835 (+) 369 WP_000849155.1 YxeA family protein -
  PQQ26_RS01715 (PQQ26_01715) - 377016..377588 (+) 573 WP_000769723.1 PepSY domain-containing protein -
  PQQ26_RS01720 (PQQ26_01720) - 377726..377989 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=782935 PQQ26_RS01575 WP_000934799.1 358577..359080(+) (ssbA) [Staphylococcus aureus strain ATCC 25923]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=782935 PQQ26_RS01575 WP_000934799.1 358577..359080(+) (ssbA) [Staphylococcus aureus strain ATCC 25923]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365