Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PQV96_RS00590 Genome accession   NZ_CP117193
Coordinates   135030..135584 (+) Length   184 a.a.
NCBI ID   WP_273624238.1    Uniprot ID   -
Organism   Acidovorax temperans strain LMJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 130030..140584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQV96_RS00580 (PQV96_00580) uvrA 130362..133466 (-) 3105 WP_066782375.1 excinuclease ABC subunit UvrA -
  PQV96_RS00585 (PQV96_00585) - 133687..134877 (+) 1191 WP_066786495.1 MFS transporter -
  PQV96_RS00590 (PQV96_00590) ssb 135030..135584 (+) 555 WP_273624238.1 single-stranded DNA-binding protein Machinery gene
  PQV96_RS00595 (PQV96_00595) mnmA 135799..136956 (-) 1158 WP_207375392.1 tRNA 2-thiouridine(34) synthase MnmA -
  PQV96_RS00600 (PQV96_00600) - 136953..137897 (-) 945 WP_207375391.1 LysR family transcriptional regulator -
  PQV96_RS00605 (PQV96_00605) - 138087..139166 (+) 1080 Protein_120 4-oxalomesaconate tautomerase -
  PQV96_RS00610 (PQV96_00610) - 139162..140094 (+) 933 Protein_121 porin -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19896.14 Da        Isoelectric Point: 5.9554

>NTDB_id=782688 PQV96_RS00590 WP_273624238.1 135030..135584(+) (ssb) [Acidovorax temperans strain LMJ]
MASINKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQTGEMREATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGVEKYSTEIRADQMQMLGGRQGMGGQGGGQQGGYDDGGYGDQGGGGYEQQAPRRAAPPPRPMAAPAPRP
APAPVAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=782688 PQV96_RS00590 WP_273624238.1 135030..135584(+) (ssb) [Acidovorax temperans strain LMJ]
ATGGCATCCATCAACAAAGTCATCATCGTCGGTAACCTGGGCCGCGACCCCGAAATGCGCACGTTTCCCAGCGGCGATCA
AGTGGCCAACGTGACGATTGCCACCACCGACAAGTGGAAAGACAAGCAAACTGGCGAAATGCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCCGCCTCGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACGGACCAGTCCGGCGTTGAAAAGTACAGCACCGAAATTCGCGCCGATCAGATGCAGAT
GCTCGGTGGCCGCCAAGGCATGGGCGGCCAAGGTGGCGGCCAGCAAGGTGGCTATGACGACGGCGGCTACGGCGACCAGG
GCGGAGGCGGCTACGAGCAGCAGGCCCCCCGCCGCGCAGCCCCCCCACCGCGCCCCATGGCCGCGCCCGCACCCCGCCCA
GCGCCAGCGCCCGTGGCACAGCCTCCGCGCGCTGCGTCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.295

100

0.538
  ssb Vibrio cholerae strain A1552

51.309

100

0.533
  ssb Neisseria meningitidis MC58

43.011

100

0.435
  ssb Neisseria gonorrhoeae MS11

43.956

98.913

0.435